User: termanini

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termanini10
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Posts by termanini

<prev • 16 results • page 1 of 2 • next >
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Comment: C: CoverageView error (bug?)
... No, sorry Alberto > Il giorno 16 giu 2017, alle ore 11:37, bioinf [bioc] <noreply@bioconductor.org> ha scritto: > > Activity on a post you are following on support.bioconductor.org > User bioinf wrote Comment: CoverageView error (bug?): > > Hi, > > Did you find an ...
written 2.2 years ago by termanini10
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Answer: A: Work with GRanges objects in DiffBind
... Thanks Rory, it works! Best, Albert   ...
written 3.0 years ago by termanini10
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Answer: A: Work with GRanges objects in DiffBind
... AHello, I am trying to do that, but I got an error: g = GRanges(seqnames = "chr1", ranges = c(1, 1000)); dba.peakset(NULL, peaks=g); Error in `[.data.frame`(peaks[[i]], , 1:4) : undefined columns selected This happen with different GRanges (with or without strand specified etc). Can anyone help ...
written 3.1 years ago by termanini10
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CoverageView error (bug?)
... Hi, I would like to use the CoverageView for get the coverage reads of many regions in many samples. I am using the function cov.matrix.        Since I have many samples and I would like to show the data with an heatmap where each row is a genomic region, each column is a sample and each cell va ...
coverageview written 3.8 years ago by termanini10
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Answer: A: seq2pathway error on Mac OS X
... Thanks guys! ...
written 3.9 years ago by termanini10
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seq2pathway error on Mac OS X
... Hello, I am trying the seq2pathway package under Mac OS X. As requested I have python2.7 installed. However, I got an error when running the function runseq2gene():  sh: C:/Python27/python: No such file or directory Error in system(command, intern = TRUE) : error in running command It seems that ...
error python seq2pathway mac os x written 3.9 years ago by termanini10
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Comment: C: RDAVIDWebService - Unable to sendViaPost to url etc etc - server time out
... The registration is successful, you will not get notifications. The package is not working because of the change of the protocol from http to https by DAVID team, and the problem is not yet fixed.   ...
written 4.0 years ago by termanini10
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Answer: A: RDAVIDWebService Error 301: Moved Permanently
... Hello, I am trying the development version (1.7) of the R package, which allow to specify the url:   my_url = "https://david.ncifcrf.gov/webservice/services/DAVIDWebService.DAVIDWebServiceHttpSoap12Endpoint/"; david = DAVIDWebService$new(email="alberto.termanini@ieo.eu", url=my_url); However, I g ...
written 4.0 years ago by termanini10
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Answer: A: RDAVIDWebService Error 301: Moved Permanently
... Hello, I am trying the development version (1.7) of the R package, which allow to specify the url:   my_url = "https://david.ncifcrf.gov/webservice/services/DAVIDWebService.DAVIDWebServiceHttpSoap12Endpoint/"; david = DAVIDWebService$new(email="alberto.termanini@ieo.eu", url=my_url); However, I g ...
written 4.0 years ago by termanini10
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Answer: A: RDAVIDWebService Error 301: Moved Permanently
... Hi Cédric, yes, we need to wait for it. Best, Alberto ...
written 4.0 years ago by termanini10

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