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Posts by wewolski
... Hi, Just comparing the output of limma and lme. The model that I fit with lme is : le <- lme(lmIntensity ~ Condition, random = ~1|Donor, data = x) Since I have repeated measures (Condition) on the same Donor and I am not interested in the Donor effect I model it as random effect. In lim ...
... Hi Tobi, Here you have a performant and IMHO easier to use solution based on pure CRAN packages seqinr and AhoCorasickTrie. use : seqinr::read.fasta(file = file, as.string = TRUE, seqtype="AA") to read your fasta. then perform the matching with: system.time(res <- AhoCorasickTrie::AhoCorasi ...
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