User: jokergoo

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jokergoo130
Reputation:
130
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Trusted
Location:
Germany
Last seen:
1 year, 7 months ago
Joined:
4 years, 2 months ago
Email:
j*******@gmail.com

Posts by jokergoo

<prev • 8 results • page 1 of 1 • next >
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Answer: A: ComplexHeatmap column dendrogram
... That was a bug that I can remember how it came to some versions of the package. I have fixed it recently. Please the newest version from GitHub (devtools::install_github("jokergoo/ComplexHeatmap").   ...
written 19 months ago by jokergoo130
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Answer: A: Assign custom dendrogram to ComplexHeatmap Heatmap object
... `mat.dend` can be assigned to `cluster_rows` argument: Heatmap(mat, cluster_rows = mat_dend) which means `cluster_rows` can be a logical value which controls whether do clustering, it can also be a `hclust` or a `dendrogram` object which already contains a customized clustering object. ...
written 3.0 years ago by jokergoo130
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Answer: A: Plotting several heatmaps onto the same grid with the ComplexHeatmap package in
... First, to put heatmaps in a grid-like layout, you need to set `newpage = FALSE` in `draw()` function: draw(hm, newpage = FALSE) ComplexHeatmap package is only designed for arranging heatmaps horizontally, it is not easy to put heatmaps as a grid style, but there is a solution for your scenario. T ...
written 3.1 years ago by jokergoo130
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Comment: C: ComplexHeatmap - Annotation without a named vector
... Hi, now it is supported in the newest version. You can update it by `devtools::install_github("jokergoo/ComplexHeatmap")` ...
written 3.2 years ago by jokergoo130
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Comment: C: ComplexHeatmap - Annotation without a named vector
... En, not in current version, but I will support it in future versions. ...
written 3.2 years ago by jokergoo130
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Answer: A: ComplexHeatmap - Annotation without a named vector
... in following code: ha = HeatmapAnnotation(df = df, col = list(type = c("black", "red"))) change `c("black", "red")` to a vector with names that names correspond to the levels in `df$type` so that we can correctly map colors to `df$type`. ...
written 3.2 years ago by jokergoo130
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Answer: A: Complex Heatmap - hide one legend, show 2 - out off three annotations
... In `HeatmapAnnotation()` function, set `show_legend = c(TRUE, TRUE, FALSE)`, then it will only show legends for the first two. ...
written 3.4 years ago by jokergoo130
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Answer: A: Heatmap Plotting in R
... I will try to make a similar figure as yours by ComplexHeatmap package and the explanations are in the comment in the code. # first generate a matrix with 10 rows and 20 columns mat = matrix(rnorm(200), 10, 20) rownames(mat) = paste0("R", 1:10) colnames(mat) = paste0("C", 1:20) # calculate the co ...
written 4.2 years ago by jokergoo130

Latest awards to jokergoo

Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Heatmap Plotting in R
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Heatmap Plotting in R
Scholar 3.9 years ago, created an answer that has been accepted. For A: Heatmap Plotting in R
Scholar 3.9 years ago, created an answer that has been accepted. For A: ComplexHeatmap - Annotation without a named vector
Scholar 4.2 years ago, created an answer that has been accepted. For A: Heatmap Plotting in R

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