User: pau.puigdevall

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Posts by pau.puigdevall

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Comment: C: filterVcf: crash with isSNV() filter argument
... Thanks Martin!! And it is even more efficient that I expected. ...
written 4.2 years ago by pau.puigdevall0
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filterVcf: error with param argument
... I am working with the filterVcf() function of the VariantAnnotation package. My goal is filtering variants by selecting SNVs that matches some genomic coordinates by passing the functions isSNV() and ScanVcfParam() as respective filters and param arguments. I have followed the tutorial of Lawrence ...
variantannotation vcf filtervcf scanvcfparam writevcf written 4.2 years ago by pau.puigdevall0 • updated 4.2 years ago by Martin Morgan ♦♦ 23k
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Answer: A: filterVcf: crash with isSNV() filter argument
... Thanks Michael!! With the update now seems that the isSNV argument is working perfectly! However, I'm just stacked again with this function. My goal by using this function is also to filter both with the SNVs and also by specifying genomic coordinates with the param argument using the ScanVcfParam. ...
written 4.2 years ago by pau.puigdevall0 • updated 4.2 years ago by Martin Morgan ♦♦ 23k
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filterVcf: crash with isSNV() filter argument
... Hello, I would like to filter one vcf by selecting only SNVs and in addition, those that only match genomic coordinates of a provided GRanges. I know that the filterVcf() function of Variant Annotation can deal with those requirements by using the isSNV() function on filters and by selecting on pa ...
variantannotation filtervcf written 4.2 years ago by pau.puigdevall0

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