User: gmerino

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gmerino20
Reputation:
20
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New User
Location:
Argentina
Last seen:
1 year, 9 months ago
Joined:
4 years, 4 months ago
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g******@bdmg.com.ar

Posts by gmerino

<prev • 4 results • page 1 of 1 • next >
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Answer: A: TarSeqQC TargetExperiment() example takes forever
... Hello! I'm one of the TarSeqQC developers. Currently, I'm working under OS X 10.12.1 (Sierra) and the example runs well. Two months ago I have experimented with a similar problem related to a new version of BiocParallel. When I tried to use more than one worker the cycles never ended. The solution ...
written 2.9 years ago by gmerino20
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Answer: A: bplapply doesn't work in the multicore mode on mac os x
... Thank you very much. The problem was solved after the BiocParallel updating to 1.8.1 version and the addition of  "options(bphost="localhost") in my R code before to the bplapply use. ...
written 3.1 years ago by gmerino20
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bplapply doesn't work in the multicore mode on mac os x
... Dear list, I'm trying to use the bplapply function in a multicore way but it doesn't work. The OS is Mac OS X (Sierra) and the macbook has 4 threads.  To test the method, I have simply run the example code bplapply(1:6, sqrt, BPPARAM = MulticoreParam(3)) But, nothing occurs in the R console and ...
bplapply mac os x multicoreparam written 3.1 years ago by gmerino20
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DEXSeq estimateExonFoldChanges breaks samples' names and counts relation
... Dear list, From version 1.16.7 the DEXSeq function: estimateExonFoldChanges does not work properly, i.e., it breaks samples and counts relation as depicted below: >count_matrix["ENSG00000180155:008",]                                               s1   s3   s4  s5  s6  s8  s9  s10 ENSG000001801 ...
dexseq software error estimateexonfoldchanges written 3.9 years ago by gmerino20 • updated 3.9 years ago by Alejandro Reyes1.7k

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