User: diana.schreier

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Posts by diana.schreier

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Comment: C: Converting Synapter object output into a MSnbase-compatible object
... It worked! Thank you for all of your help Laurent and Sebastian, I really appreciate it.  ...
written 3.2 years ago by diana.schreier0
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Answer: A: Converting Synapter object output into a MSnbase-compatible object
... Hello,  I did the data analysis using synapter 1.11.1 and again used the .rda output as obj and I got a different error message:  > x <- as(obj, "MSnSet") Error in `[.data.frame`(from$MatchedEMRTs, , cols) :    undefined columns selected I am not exactly sure what this means. Do you have ...
written 3.2 years ago by diana.schreier0
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Answer: A: Converting Synapter object output into a MSnbase-compatible object
... Hi Laurent,  ​I have been checking the link you provided earlier for the updated 1.11.1 version to become available, but I have not seen it. Am I looking in the wrong location?   Thank you,  Diana   ...
written 3.2 years ago by diana.schreier0
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Answer: A: Converting Synapter object output into a MSnbase-compatible object
... That's great. I look forward to using it.    Thank you for your help. I greatly appreciate it.   ...
written 3.3 years ago by diana.schreier0
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Answer: A: Converting Synapter object output into a MSnbase-compatible object
... Hello Laurent,  I am sorry it has taken so long to respond. I had some computer difficulties and have been moving. I have had to switch computers. This is my new sessionInfo() output. > sessionInfo() R version 3.2.2 (2015-08-14) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 1 ...
written 3.3 years ago by diana.schreier0
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Answer: A: Converting Synapter object output into a MSnbase-compatible object
... Laurent,  I created obj through the synergise function. In the output file that I specified there was an rda file titled SynapterObject. I opened this and was asked "Do you want to load the R data file “C:/Users/Diana/Documents/Synapter/Aug17/SynapterObject.rda” into the global environment?" I clic ...
written 3.3 years ago by diana.schreier0
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Converting Synapter object output into a MSnbase-compatible object
... Hello everyone,  I am new to R and have a question regarding converting the synapter object output that I created into a MSnbase compatible object. I loaded my synapter object output into R and is labeled obj. To do the conversion I followed the guidelines provided in this pdf (http://www.biocondu ...
synapter msnbase written 3.3 years ago by diana.schreier0

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Scholar 3.2 years ago, created an answer that has been accepted. For A: Converting Synapter object output into a MSnbase-compatible object

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