User: parap

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parap0
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Posts by parap

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Comment: C: Minfi error in reading Basename column
... I resolved this issue by rechecking that the idat files match with the sample sheet as the basename column is populated automatically based on the idat files and sample sheet. I would suggest re-creating another sample sheet and test this by reading in smaller sample set. That worked for me eventual ...
written 3.9 years ago by parap0
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Comment: C: Minfi error in reading Basename column
... Thanks for the prompt response James!  Sure, I will chose right category while posting next time, thanks for correcting.  Thanks for the pointing the error, yes I checked the data and seems I received incomplete dataset, so wrong Basename column was generated. It removed few samples and it runs fi ...
written 4.2 years ago by parap0
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Minfi error in reading Basename column
... Hello all,  I am new to  Methylation data analysis and having problem in importing data in minfi package-  After  targets <-read.450k.sheet(baseDir, pattern = "csv$"),  it reads the data sample sheet which has basic Sample_name, Slide etc, I get error in Basename column name ( which is not ther ...
minfi methylation written 4.2 years ago by parap0 • updated 3.1 years ago by SplittingInfinity50

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Popular Question 3.9 years ago, created a question with more than 1,000 views. For Minfi error in reading Basename column

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