## User: ngs06

ngs0620
Reputation:
20
Status:
New User
Location:
Sweden
Last seen:
5 months ago
Joined:
3 years, 10 months ago
Email:
a*******************@ki.se

#### Posts by ngs06

<prev • 8 results • page 1 of 1 • next >
0
167
views
0
... Thanks Julie, for your clarification:) ...
written 5 months ago by ngs0620
0
167
views
0
... Yes, coming back to my main question. If "both" is considering overlapping features with maxgap:5000 then why does it reported the gene Cpa6 as its "overlapping" with distance of 72153 (which is > 5000 bp) Example here:  seqnames start end width strand peakNames peak feature star ...
written 5 months ago by ngs0620
0
167
views
0
... Thanks for your reply Ou! But i am using "both" option not the "nearestLocation" . And according to the manual maxgap should be considered for this parameter right? "both" will output all the nearest features, in addition, will output any features that overlap the peak that is not the nearest fea ...
written 5 months ago by ngs0620
0
167
views
0
... Hi, I tried to annotate my chipseq peak called regions with ChIPpeakAnno package using the following command. If i understand correctly : output=both, annotates to the nearest features (upstream and downstream) as well as the features overlapping within given maxgap (i.e 5000 bp ) distance. ` fi ...
written 5 months ago by ngs0620
1
148
views
1
Comment: C: Problems installing RBGL in R
... It worked and error is solved. Thank you very much! ...
written 8 months ago by ngs0620
1
148
views
1
... Hello, I have updated my R software to 3.5.1. I am trying to install 'RBGL' package and had problems installing it. Previously I was using R.3.4.4 and had no problems with 'RBGL ' installation Can anyone help me in pointing out, what the error message corresponds to? And here is gcc version deta ...
written 8 months ago by ngs0620 • updated 8 months ago by Martin Morgan ♦♦ 23k
1
1.1k
views
1
... Thanks Aaron for quick response! I will go through the package .. ...
written 3.8 years ago by ngs0620
1
1.1k
views
1
... Hi, In most of the chipseq papers, inorder to visualize the intensity signals the data is represented in the form of normalized counts. One such is this paper http://www.nature.com/nature/journal/v488/n7409/full/nature11243.html, in the supplementary methods they described the procedure as "To gen ...
written 3.8 years ago by ngs0620 • updated 3.8 years ago by Aaron Lun24k

#### Latest awards to ngs06

Popular Question 8 months ago, created a question with more than 1,000 views. For ChipSeq binning and normalization

Content
Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.