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1.1k
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Comment:
Comment: stat value is throwed out after lfcShrink in DESeq2
3.3 years ago
Nik Tuzov
▴ 80
0
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0
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1.0k
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Comment:
Comment: DeSEQ2 factor effect without interaction effect
3.3 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
462
views
Comment:
C: The basis for the full rank design matrix requirement in DESeq2
4.2 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
786
views
Comment:
C: Error when providing contrast coefficients to lfcShrink() of DESeq2 package
4.4 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.3k
views
Comment:
C: FCSTransTransform() implementation in flowCore
4.9 years ago
Nik Tuzov
▴ 80
0
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0
replies
1.7k
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Comment:
C: Estimation of non-trivial contrasts in MAST
5.0 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Estimation of non-trivial contrasts in MAST
5.1 years ago
Nik Tuzov
▴ 80
0
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0
replies
1.7k
views
Comment:
C: Estimation of non-trivial contrasts in MAST
5.2 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.2k
views
Comment:
C: Logistic regression in MAST - question
5.2 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Estimation of non-trivial contrasts in MAST
5.2 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
4.3k
views
Comment:
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6.6 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Seeking confirmation on manually setting contrasts for a 3-factor design in DESe
6.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
6.0k
views
Comment:
C: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
6.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
6.0k
views
Comment:
C: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
6.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Seeking confirmation on manually setting contrasts for a 3-factor design in DESe
6.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Interactions in DESeq2
6.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
2.5k
views
Comment:
C: Zero inflation in RUV normalization and DE for single cell data
6.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
2.5k
views
Comment:
C: Zero inflation in RUV normalization and DE for single cell data
6.7 years ago
Nik Tuzov
▴ 80
0
votes
2
replies
2.5k
views
Comment:
C: Zero inflation in RUV normalization and DE for single cell data
6.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
2.3k
views
Comment:
C: Does it make sense to consider RUVr normalization for single cell RNA analysis?
6.8 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
2.3k
views
Comment:
C: Does it make sense to consider RUVr normalization for single cell RNA analysis?
6.8 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
6.2k
views
Comment:
C: Limma-voom vs limma-trend
7.3 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
6.2k
views
Comment:
C: Limma-voom vs limma-trend
7.3 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
6.2k
views
Comment:
C: Limma-voom vs limma-trend
7.3 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
6.2k
views
Comment:
C: Limma-voom vs limma-trend
7.4 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
1.8k
views
Comment:
C: Overriding of shrinkage in DESeq2
8.0 years ago
Nik Tuzov
▴ 80
0
votes
2
replies
1.8k
views
Comment:
C: Overriding of shrinkage in DESeq2
8.0 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Overriding of shrinkage in DESeq2
8.1 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
3.7k
views
Comment:
C: Low-count filtering with uneven sequencing depth between samples?
8.4 years ago
Nik Tuzov
▴ 80
0
votes
2
replies
3.7k
views
Comment:
C: Low-count filtering with uneven sequencing depth between samples?
8.4 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
3.7k
views
Comment:
C: Low-count filtering with uneven sequencing depth between samples?
8.4 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
2.8k
views
Comment:
C: (how) can I make heatmaps/PCA in DESeq2 using normalized counts from cummeRbund?
8.5 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
7.8k
views
Comment:
C: Normalization methodology in DESeq/DESeq2 vs edgeR
8.5 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
2.8k
views
Comment:
C: (how) can I make heatmaps/PCA in DESeq2 using normalized counts from cummeRbund?
8.5 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
49k
views
Comment:
C: deseq2 filter the low counts
8.5 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
38k
views
Comment:
C: Differential expression of RNA-seq data using limma and voom()
8.5 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
1.7k
views
Comment:
C: Performance of different flavors of limma and edgeR as the sample size goes up
8.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Performance of different flavors of limma and edgeR as the sample size goes up
8.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Performance of different flavors of limma and edgeR as the sample size goes up
8.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
3.3k
views
Comment:
C: What was the very first paper to describe "limma-trend"?
8.7 years ago
Nik Tuzov
▴ 80
0
votes
1
reply
3.3k
views
Comment:
C: What was the very first paper to describe "limma-trend"?
8.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
1.8k
views
Comment:
C: Interactions in DESeq2
8.7 years ago
Nik Tuzov
▴ 80
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