User: Ariel Chernomoretz

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Posts by Ariel Chernomoretz

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Answer: A: biomaRt. useMart with mysql=TRUE gives segfault!
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written 13.0 years ago by Ariel Chernomoretz380
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biomaRt. useMart with mysql=TRUE gives segfault!
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written 13.0 years ago by Ariel Chernomoretz380
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Answer: A: GOstat
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written 13.0 years ago by Ariel Chernomoretz380
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Answer: A: biomart scripting help....RMySQL install problem
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written 13.0 years ago by Ariel Chernomoretz380
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biomart scripting help....RMySQL install problem
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written 13.0 years ago by Ariel Chernomoretz380
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Answer: A: biomart scripting help
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written 13.0 years ago by Ariel Chernomoretz380
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Answer: A: biomart scripting help
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written 13.0 years ago by Ariel Chernomoretz380
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Comment: C: decideTests with nestedF
... Hi Pedro, you can check if something went wrong using the following code: padj=apply(limma.fit$p.value,2,p.adjust,method="fdr") maux=padj*abs(resDecideTest) #report genes with at least one pvalue significant i<-apply(maux,1,function(x){any(x)}) cat(paste("# DE genes:",sum(i),"\n")) ...
written 13.5 years ago by Ariel Chernomoretz380
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plier 1.2.0 compilation error (FC4 64bits)
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written 13.8 years ago by Ariel Chernomoretz380
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Comment: C: Masking single Oligos in mas5
... Hi Benjamin mmm...try replacing the line : $ tmp <- as.vector(ans[[i]][, i.probes]) with $ tmp <- as.vector(as.matrix(ans[[i]])[, i.probes]) here is why i think that may work... > l<-list(1,as.matrix(1)) > l[[1]][,1] Error in l[[1]][, 1] : incorrect number of dimensions > ...
written 14.0 years ago by Ariel Chernomoretz380

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