User: alptaciroglu

gravatar for alptaciroglu
alptaciroglu50
Reputation:
50
Status:
New User
Location:
Turkey
Last seen:
2 years, 7 months ago
Joined:
3 years, 2 months ago
Email:
a***********@gmail.com

Posts by alptaciroglu

<prev • 23 results • page 1 of 3 • next >
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getGEO is taking too long time for a file that is already locally cached
... I am using getGEO() function from GEOquery package to retrieve a dataset that I previously downloaded. It says using locally cached version of series matrix file and again locally cached version of GPL570 file. If I download series matrix file from GEO and read it by read.table it takes couple of se ...
R getgeo written 2.8 years ago by alptaciroglu50
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ggplot same data, different plots
... Dear All,   I have a dataframe which I want to plot two different variables, x-axis and y-axis respectively.  A sample from my dataframe looks like this but just imagine this with a lot more columns : Groups     X -axis    Y -axis Group1      10            20 Group1      15            25 Grou ...
plot ggplot2 ggplot written 2.9 years ago by alptaciroglu50 • updated 2.9 years ago by James W. MacDonald48k
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Comment: C: Connection Refused on port 9000 - RCytoscape
... Thanks I will try ...
written 3.0 years ago by alptaciroglu50
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Connection Refused on port 9000 - RCytoscape
... Dear All,   I am trying to use RCytoscape on an adjacency matrix. I converted adjacency matrix into a graphBAM object (dont really know if RCytoscape runs on that type of object but from what I read it should).    g A graphBAM graph with directed edges Number of Nodes = 130  Number of Edges = 14 ...
network rcytoscape R graphbam object written 3.0 years ago by alptaciroglu50 • updated 3.0 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Network generation from adjacency matrix of zeroes and ones
... That was great. Thank you. Do you know how to put labels on nodes? Right now, it is only showing me with numbers 1,2 etc.. I am sorry posted that as an answer ...
written 3.0 years ago by alptaciroglu50
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Answer: A: Network generation from adjacency matrix of zeroes and ones
... That was great. Thank you. Do you know how to put labels on nodes? Right now, it is only showing me with numbers 1,2 etc.. ...
written 3.0 years ago by alptaciroglu50
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Network generation from adjacency matrix of zeroes and ones
... Dear All, I have an adjacency matrix as follows:                   Gene1       Gene2         Gene3     Gene4     Gene5    Gene6      Gene7   Gene8    Gene9  Gene10 Gene11 miRNA1          0          0                  0              0              0             0            1            0         ...
mirna R adjacency matrix written 3.0 years ago by alptaciroglu50
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Answer: A: getGEO - cannot Open URL issue
... I was unable to use getGEO because of institutions proxy settings. Thanks to James W. MacDonald and Sean Davis for helping me out. ...
written 3.2 years ago by alptaciroglu50
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Comment: C: getGEO - cannot Open URL issue
... I was able to download using a USB modem but I cant download connected to the internet my institute provides. That would mean I need to alter something in my connection right. Can you tell me how to bypass this using institutes internet ? ...
written 3.2 years ago by alptaciroglu50
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Comment: C: getGEO - cannot Open URL issue
... I also tried copy-pasting the URL in a browser which automatically downloaded the desired file to my computer. ...
written 3.2 years ago by alptaciroglu50

Latest awards to alptaciroglu

Popular Question 2.6 years ago, created a question with more than 1,000 views. For Connection Refused on port 9000 - RCytoscape
Popular Question 2.6 years ago, created a question with more than 1,000 views. For getGEO - cannot Open URL issue

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