User: N. F.

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N. F.0
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Posts by N. F.

<prev • 4 results • page 1 of 1 • next >
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Different amount of overlapping Peaks in ChIPpeakAnno-Package
... Hey guys, I'm facing the following problem: When using findOverlapsOfPeaks() with four Peak-Datasets and maxgap = 1000 I get 17376 peaks, which overlap in all four datasets when I look into the data. When using makeVennDiagram() to draw an image of the overlaps it says 18703 for all four datasets, ...
chippeakanno venn diagram findoverlaps written 3.7 years ago by N. F.0
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Comment: C: Odd Pictures by plotVenn()
... Thanks for the answer and sorry for the late reply: It's really just a problem with the scale. I tried some rescaling and got different results (some of them look - kinda - good). I'll just look for a proper setting and work with that. ...
written 3.8 years ago by N. F.0
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Comment: C: Odd Pictures by plotVenn()
... Thanks for your answer: I am working with RStudio at the moment. When exporting it with larger scale there's nearly no difference except for larger circles. ...
written 3.8 years ago by N. F.0
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Odd Pictures by plotVenn()
... Hello folks, I tried to use plotVenn() from the DiffBind-package to compare the differential bound sites generated by DESeq, DESeq2 and edgeR. It seems to work - kinda - but anyhow the output-image looks odd (the circles are not overlapping the right way). Here's a picture of how it looks like:   ...
plotvenn written 3.8 years ago by N. F.0 • updated 3.8 years ago by Rory Stark2.8k

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