User: malikbashirkhan2

Reputation:
0
Status:
New User
Last seen:
3 years, 9 months ago
Joined:
3 years, 10 months ago
Email:
m***************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by malikbashirkhan2

<prev • 15 results • page 1 of 2 • next >
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... i run the following commands ann <- data.frame( + GeneID=c("gene1","gene1","gene2","gene2"), + Chr="chr_dummy", + Start=c(100,1000,3000,5000), + End=c(500,1800,4000,5500), + Strand=c("+","+","-","-"), + stringsAsFactors=FALSE) > fc_SE <- featureCounts("0_sorted.bam",annot.ext=ann) ...
written 3.8 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... Sir this is the output of feature count.How to tabulate read count through it,,Sir actually there is no concerned Professor here to help us out so may be our questions are not explained properly .kindly let me know if you didnt get what i said.i need those read count in a table form which is further ...
written 3.8 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... actually we want to tabulate the count of genes ..which parameter will do it ? ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... sir we have tha sam file but we need tsv file so that we can open it using excel and perform analysis on it .. ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... sir i followed your instruction and limited the parameters and perform the following steps p2 <- ScanBamParam(what=c("rname", "strand", "pos", "qwidth")) then run this command res2 <- scanBam("0_sorted.bam", param=p2) then i wrote this command write.table(file="out.tsv",data.frame(c("rna ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... bioinformatics@bioinformatics-desktop:~/bowtie2/SRR630463$ R R version 3.2.0 (2015-04-16) -- "Full of Ingredients" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redis ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... sir i tried these commands in another way it runs but it hangs my system for unlimited time then i restarts my system. i tried it multiple times but it hangs the system all the time. plz sir help me what to do.   ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: A: Convertion of indexed bam file to tsv file format
... sir my problem is that i have .BAI file and i wants to convert this into TSV file format. for this we need a python script and i have that python script. now plz sir help me how to convert this file into tsv. ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... sir i installed the Rsamtools Package again and i had run them at the R prompt. At R prompt it gives this error. bash: syntax error near unexpected token `(' ...
written 3.9 years ago by malikbashirkhan20
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Convertion of indexed bam file to tsv file format
... i tried but it gives syntax error bash: syntax error near unexpected token `('   ...
written 3.9 years ago by malikbashirkhan20

Latest awards to malikbashirkhan2

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 251 users visited in the last hour