## User: malikbashirkhan2

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#### Posts by malikbashirkhan2

<prev • 15 results • page 1 of 2 • next >
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... i run the following commands ann <- data.frame( + GeneID=c("gene1","gene1","gene2","gene2"), + Chr="chr_dummy", + Start=c(100,1000,3000,5000), + End=c(500,1800,4000,5500), + Strand=c("+","+","-","-"), + stringsAsFactors=FALSE) > fc_SE <- featureCounts("0_sorted.bam",annot.ext=ann) ...
written 3.8 years ago by malikbashirkhan20
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... Sir this is the output of feature count.How to tabulate read count through it,,Sir actually there is no concerned Professor here to help us out so may be our questions are not explained properly .kindly let me know if you didnt get what i said.i need those read count in a table form which is further ...
written 3.8 years ago by malikbashirkhan20
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... actually we want to tabulate the count of genes ..which parameter will do it ? ...
written 3.9 years ago by malikbashirkhan20
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... sir we have tha sam file but we need tsv file so that we can open it using excel and perform analysis on it .. ...
written 3.9 years ago by malikbashirkhan20
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... sir i followed your instruction and limited the parameters and perform the following steps p2 <- ScanBamParam(what=c("rname", "strand", "pos", "qwidth")) then run this command res2 <- scanBam("0_sorted.bam", param=p2) then i wrote this command write.table(file="out.tsv",data.frame(c("rna ...
written 3.9 years ago by malikbashirkhan20
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... bioinformatics@bioinformatics-desktop:~/bowtie2/SRR630463\$ R R version 3.2.0 (2015-04-16) -- "Full of Ingredients" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redis ...
written 3.9 years ago by malikbashirkhan20
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... sir i tried these commands in another way it runs but it hangs my system for unlimited time then i restarts my system. i tried it multiple times but it hangs the system all the time. plz sir help me what to do.   ...
written 3.9 years ago by malikbashirkhan20
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... sir my problem is that i have .BAI file and i wants to convert this into TSV file format. for this we need a python script and i have that python script. now plz sir help me how to convert this file into tsv. ...
written 3.9 years ago by malikbashirkhan20
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... sir i installed the Rsamtools Package again and i had run them at the R prompt. At R prompt it gives this error. bash: syntax error near unexpected token (' ...
written 3.9 years ago by malikbashirkhan20
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... i tried but it gives syntax error bash: syntax error near unexpected token ('   ...
written 3.9 years ago by malikbashirkhan20

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