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Comment: Comment: Help with limma contrast, difference of a difference?
22 months ago Ahdee ▴ 50
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1.9k
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Comment: Comment: Help with limma contrast, difference of a difference?
22 months ago Ahdee ▴ 50
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1
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1.9k
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Comment: Comment: Help with limma contrast, difference of a difference?
22 months ago Ahdee ▴ 50
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1
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1.9k
views
Comment: Comment: Help with limma contrast, difference of a difference?
22 months ago Ahdee ▴ 50
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1
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1.0k
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Comment: Comment: Need help with a contrast design for limma with a missing group?
2.2 years ago Ahdee ▴ 50
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1.4k
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Comment: Comment: Confused about using ComBat_seq with voom and limma? Should run batch as a cova
2.7 years ago Ahdee ▴ 50
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3.2k
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Comment: Comment: How to count barcode sequences in a fastq file
2.7 years ago Ahdee ▴ 50
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1.9k
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Comment: Comment: How to filter EnsDb into another EnsDb object instead of GRange?
2.9 years ago Ahdee ▴ 50
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1
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1.9k
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Comment: Comment: How to filter EnsDb into another EnsDb object instead of GRange?
2.9 years ago Ahdee ▴ 50
0
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1
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1.9k
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Comment: Comment: How to filter EnsDb into another EnsDb object instead of GRange?
2.9 years ago Ahdee ▴ 50
0
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0
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1.9k
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Comment: Comment: How to filter EnsDb into another EnsDb object instead of GRange?
2.9 years ago Ahdee ▴ 50
0
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1
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1.8k
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Comment: Comment: How to calculate coefficient of variation within group?
3.2 years ago Ahdee ▴ 50
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758
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Comment: C: In EdgeR TMM and/or voom is it better to normalize all samples, even if some wil
3.8 years ago Ahdee ▴ 50
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1
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2.1k
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Comment: C: tximport from RSEM expected counts: is it possible to import from a table rather
3.8 years ago Ahdee ▴ 50
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1.5k
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Comment: C: Can I use (length bias normalization) from packages like EDAseq or cqn for input
4.4 years ago Ahdee ▴ 50
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1.5k
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Comment: C: Can I use (length bias normalization) from packages like EDAseq or cqn for input
4.4 years ago Ahdee ▴ 50
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1
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1.5k
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Comment: C: Can I use (length bias normalization) from packages like EDAseq or cqn for input
4.4 years ago Ahdee ▴ 50
0
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1
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1.5k
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Comment: C: Can I use (length bias normalization) from packages like EDAseq or cqn for input
4.4 years ago Ahdee ▴ 50
0
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1
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1.2k
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Comment: C: UnProducible error with goana and kegga function
4.6 years ago Ahdee ▴ 50
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922
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Comment: C: How to create two columns for model matrix used in limma?
4.7 years ago Ahdee ▴ 50
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1
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678
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Comment: C: Limma model design: is it better to just build a separate design for each specif
4.9 years ago Ahdee ▴ 50
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1
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678
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Comment: C: Limma model design: is it better to just build a separate design for each specif
4.9 years ago Ahdee ▴ 50
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1.1k
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Comment: C: Why does limma voom E value give different result than the voom object
5.0 years ago Ahdee ▴ 50
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11k
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Comment: C: Seurat 2.3.4 installation
5.0 years ago Ahdee ▴ 50
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2.0k
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Comment: C: Where to download expected counts instead of normalized RSEM for TCGA LUAD?
5.7 years ago Ahdee ▴ 50
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857
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Comment: C: Combining groups in a LIMMA design
5.8 years ago Ahdee ▴ 50
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721
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Comment: C: Run edgeR or Voom+LIMMA where groups are dynamically reassigned for each gene.
5.8 years ago Ahdee ▴ 50
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4.8k
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Comment: C: Using of limma moderated t-test with "corrected" expression matrix resulting fr
6.5 years ago Ahdee ▴ 50
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4.0k
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Comment: C: Method for batch correction
6.5 years ago Ahdee ▴ 50
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0
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18k
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Comment: C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
6.7 years ago Ahdee ▴ 50
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904
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Comment: C: LIMMA 2x2 with time
6.9 years ago Ahdee ▴ 50
1
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9.2k
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Comment: C: Minfi error in reading Basename column
7.1 years ago Ahdee ▴ 50
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992
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Comment: C: Treating 2 coefficients as the same group in Limma
7.6 years ago Ahdee ▴ 50
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4
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4.4k
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Comment: C: Illumina MethylationEPIC vs. 450K
8.2 years ago Ahdee ▴ 50
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4.4k
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Comment: C: Illumina MethylationEPIC vs. 450K
8.2 years ago Ahdee ▴ 50
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2.3k
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Comment: C: How to use TopGO with gene symbols extracted from Illumina probes
8.6 years ago Ahdee ▴ 50
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1.5k
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Comment: C: Help with 2x2 factorial for using LIMMA
8.6 years ago Ahdee ▴ 50
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1
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1.5k
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Comment: C: Help with 2x2 factorial for using LIMMA
8.6 years ago Ahdee ▴ 50
0
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1
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1.5k
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Comment: C: Help with 2x2 factorial for using LIMMA
8.6 years ago Ahdee ▴ 50
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