User: jenniewoo

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jenniewoo20
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United States
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3 years ago
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4 years, 1 month ago
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j********@yahoo.com

Posts by jenniewoo

<prev • 4 results • page 1 of 1 • next >
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vcfR package vector length error
... I am trying to use vcfR package to do some plots but could not import hg19 reference genome fasta file. The error is  long vectors not supported yet: ../../src/include/Rinlinedfuns.h:137 Any idea how to increase the vector length so that big fasta can be imported? Thanks. >ape::read.dna(dna_fi ...
vcf written 3.0 years ago by jenniewoo20 • updated 3.0 years ago by Martin Morgan ♦♦ 24k
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Comment: C: DESeq2 ANODEV with 3 sample groups
... Thanks Mike for the prompt reply. Yes I checked and the baseMean, test stats, pvalue and padj are all the same! That makes sense. Thank you so much for your help! Our community benefit tremendously from your responses.  ...
written 4.1 years ago by jenniewoo20
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Comment: C: DESeq2 ANODEV with 3 sample groups
... Thanks very much for the kind reply! It is very helpful. You are right. I did see that the object returned by results() says "LTR p-value '~ condition' vs '~ 1'. That is clear. The log2 fold change (MLE) is C vs A. My question is, if I do res2=results(dds, contrast=c("condition", "B", "A")), I got a ...
written 4.1 years ago by jenniewoo20
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DESeq2 ANODEV with 3 sample groups
... I'm trying to use DESeq2 to perform something like a one-way ANOVA on 3 groups of samples. I've seen the same question and answer here: https://support.bioconductor.org/p/61563/ However, I can't seem to  get a single p value. I have my data input successfully, and I've been able to perform pairwis ...
deseq2 written 4.1 years ago by jenniewoo20 • updated 4.1 years ago by Michael Love26k

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Popular Question 3.0 years ago, created a question with more than 1,000 views. For DESeq2 ANODEV with 3 sample groups

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