User: moanam

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moanam0
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Posts by moanam

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Comment: C: Error in file(con, “r”) : cannot open the connection
... I meant file.choose(). Yes, I have been getting the same JSON error. I found another thread that suggests that this may be due to newer versions of qiime producing biom files in a different format which is not read correctly into phyloseq. https://github.com/joey711/phyloseq/issues/443 I'll check m ...
written 4.1 years ago by moanam0
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Comment: C: Error in file(con, “r”) : cannot open the connection
... This seems to have caused problems further down the line with the otu table not being read properly ...
written 4.1 years ago by moanam0
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Comment: C: Error in file(con, “r”) : cannot open the connection
... It worked!! Thank you!!! ...
written 4.2 years ago by moanam0
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Comment: A: Error in file(con, “r”) : cannot open the connection
... I feel like such an idiot, I got the file path wrong - missed a "/". However, when I corrected it I still got an error: > biom_otu_tax <- import_biom("D:/from_qiime/micro/results/otus_open_ref_R1/otu_table_mc2_w_tax_no_pynast_failures.biom") Error in fromJSON(content, handler, default.size, ...
written 4.2 years ago by moanam0
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Error in file(con, “r”) : cannot open the connection
... Using R 3.2.2 in Windows 8.1, I'm trying to import a qiime otu table file, using this code: biom_otu_tax <- import_biom("D:/from_qiime/micro/results/otus_open_ref_R1otu_table_mc2_w_tax_no_pynast_failures.biom") However, I get the error message: Error in file(con, "r") : cannot open the connec ...
phyloseq R import_biom otu qiime written 4.2 years ago by moanam0 • updated 4.1 years ago by mcmurdie20

Latest awards to moanam

Great Question 4.1 years ago, created a question with more than 5,000 views. For Error in file(con, “r”) : cannot open the connection
Epic Question 4.1 years ago, created a question with more than 10,000 views. For Error in file(con, “r”) : cannot open the connection
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Error in file(con, “r”) : cannot open the connection

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