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Posts by jaison75
Answer: A: GSVA for single sample
... Thank you very much Robert. I cannot believe, I did not catch that. This solved the issue. ...
... Hello, I am trying to use GSVA to calculate an enrichment score for a single sample. I thought the ssgsea method implemented in GSVA can perm such a calculation. Do I have this wrong? My searches have returned empty handed. I am pasting an example code below I used to test the concept (modifed ...
... Hi, I am a little confused about constructing the the appropriate contrast matrix in Limma when I have continuous variables as one of the predictors and an interaction term in my model. I am posting a minimal example below. library(limma) age = sample(c(20:75),80, replace=T) gender <- sample ...
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