User: jaison75

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jaison7520
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New User
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United States
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1 year, 6 months ago
Joined:
3 years, 10 months ago
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Posts by jaison75

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Answer: A: GSVA for single sample
... Thank you very much Robert.  I cannot believe, I did not catch that.  This solved the issue. ...
written 18 months ago by jaison7520
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GSVA for single sample
... Hello, I am trying to use GSVA to calculate an enrichment score for a single sample.  I thought the ssgsea method implemented in GSVA can perm such a calculation.  Do I have this wrong?  My searches have returned empty handed.  I am pasting an example code below I used to test the concept (modifed ...
gsva gsea ssgsea written 18 months ago by jaison7520
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Calculating contrasts for continuous variable anad interaction effect in Limma
... Hi, I am a little confused about constructing the the appropriate contrast matrix in Limma when I have continuous variables as one of the predictors and an interaction term in my model. I am posting a minimal example below. library(limma) age = sample(c(20:75),80, replace=T) gender <- sample ...
design and contrast matrix interactions limma design matrix continuous written 3.9 years ago by jaison7520 • updated 3.9 years ago by Aaron Lun24k

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Popular Question 3.8 years ago, created a question with more than 1,000 views. For Calculating contrasts for continuous variable anad interaction effect in Limma

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