User: Viktor Thiel

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Posts by Viktor Thiel

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Answer: A: flowWorkspace: Crash when using getPopStats with format="wide"
... I got rid of the compilation error after downgrading the BH package to 1.58.0-1, which got bumped to 1.60 during an auto-update. Neither flowCore nor flowWorkspace seem to currently like this. After recompilation, I also got rid of the segfault, so I guess that fixed itself. Thanks for your input, ...
written 4.0 years ago by Viktor Thiel0
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Comment: C: flowWorkspace: Crash when using getPopStats with format="wide"
... I've tried building flowWorkspace from scratch in an empty library and now fail at this step. boost_serialization/basic_archive.cpp:44:20: error: expected unqualified-id before ‘const’ BOOST_ARCHIVE_DECL(const char *) ^ boost_serialization/basic_archive.cpp:44:20: error: expec ...
written 4.0 years ago by Viktor Thiel0
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Comment: C: flowWorkspace: Crash when using getPopStats with format="wide"
... Thanks for the reply. I get the same error even with the recompute, but it's good to know that it's on my end. I guess I'll start looking for a faulty lib ... ...
written 4.0 years ago by Viktor Thiel0
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flowWorkspace: Crash when using getPopStats with format="wide"
... Dear all! I am trying to move my flow analysis to Bioconductor's flow packages, but I ran into trouble. I can create a GatingSet object and properly apply my gating steps manually or use openCyto to do it for me, but getPopStats() with format="wide" fails spectacularly (see below for the full trac ...
flowworkspace written 4.0 years ago by Viktor Thiel0
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Comment: C: openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClu
... Brilliant, thank you! Your help is highly appreciated. I am still at the very beginning of getting to terms with the flow packages, but I hope to use them to their full potential soon. Thanks for your work. ...
written 4.0 years ago by Viktor Thiel0
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Comment: C: openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClu
... I was running openCyto 1.8.0, but I updated it to 1.8.2 now. Unfortunately, the problem with visualizing the quadGate still persists. sessionInfo() output: locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C                [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=de_DE.UTF-8      [5] LC_MONETARY= ...
written 4.1 years ago by Viktor Thiel0
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Comment: C: openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClu
... Thank you for your reply! Please excuse my delayed reaction. I can, in fact, plot the quadGate the way you described. I don't know why I missed that. However, it still does not display more than the one diagonal line, as shown in the image in my original post. I would also highly value your input on ...
written 4.1 years ago by Viktor Thiel0
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openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
... Hello everybody,   I have recently started using BioConductor and its flow packages in particular and now would like to learn openCyto. I have a very simple four-color panel for testing purposes. For one of my gating steps, I would like to use the quadGate.tmix method, since the populations are bl ...
flowclust opencyto opencyto gating written 4.1 years ago by Viktor Thiel0 • updated 4.0 years ago by Greg Finak240

Latest awards to Viktor Thiel

Popular Question 2.6 years ago, created a question with more than 1,000 views. For openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
Scholar 4.0 years ago, created an answer that has been accepted. For A: flowWorkspace: Crash when using getPopStats with format="wide"

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