User: galib36

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galib3610
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United Kingdom
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1 year, 3 months ago
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Posts by galib36

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Comment: C: Why Diffbind function dba.peakset gives 1
... Asking the following question just for a bit of more clarification, I have two sets of single cells, each composed of 96 cells. When using bedtools multimap, I combine the peakset from all these 192 cells and then count the overlapping peaks to have the count for each cell. I was wondering, is this ...
written 15 months ago by galib3610
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Answer: A: Why Diffbind function dba.peakset gives 1
... Thank you for the Clarification ...
written 15 months ago by galib3610
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Why Diffbind function dba.peakset gives 1
... Hello Rory, I am using diffbind to extract the raw counts for my PEAKS. I used the function myData.RawCount <- dba.count(myData, score=DBA_SCORE_READS) myData.RawCount.value <- dba.peakset(myData.RawCount, bRetrieve=TRUE, writeFile="../RawReads.txt") I am using it for Single-cell ATAC seq ...
diffbind written 15 months ago by galib3610
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Monocle causes R session to crash
... I was trying to use monocle. I started with the monocle-vignette.R code. But as soon as I run the command newCellDataSet() my R session crashes. It happens in RStudio as well as in R sessions in command prompt. Could you please suggest how to solve it. ...
software error monocle written 20 months ago by galib3610 • updated 4 days ago by kevin.rue200

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