User: sergio.martinezcuesta

Reputation:
10
Status:
New User
Location:
United Kingdom
Last seen:
3 months, 3 weeks ago
Joined:
3 years, 1 month ago
Email:
s********************@cruk.cam.ac.uk

Posts by sergio.martinezcuesta

<prev • 6 results • page 1 of 1 • next >
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Transcript biotypes for ncRNA in GRCh37 using biomaRt?
... Dear all, I am attempting to retrieve transcript biotypes for ncRNAs using Bioconductors's biomaRt in GRCh37 as follows: library(biomaRt) ensembl <- useMart(biomart="ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.org", dataset="hsapiens_gene_ensembl") # biotypes for mRNAs are obtained fine ref ...
biomart grch37 ncrna transcripts biotype written 3 months ago by sergio.martinezcuesta10 • updated 3 months ago by James W. MacDonald48k
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Comment: C: edgeR constrast drug treatments and time points
... Thanks!       ...
written 2.1 years ago by sergio.martinezcuesta10
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edgeR constrast drug treatments and time points
... Dear all, I need some feedback for defining contrasts in edgeR. We are using sequencing to count shRNAs in a screen aiming to understand the effect of drug treatment in one cell line. We work with two time points (t0 and t1) and four drug treatment levels (untreated, solvent, drug1 and drug2). The ...
edger contrast written 2.1 years ago by sergio.martinezcuesta10 • updated 2.1 years ago by Aaron Lun21k
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Job: Research Associate, Computational Biology / Bioinformatics, CRUK-CI, University of Cambridge, UK
...   We seek a highly motivated computational researcher for a key role within Professor Balasubramanian's pioneering research programme at the Cancer Research UK Cambridge Institute (CI). The CI focuses on multi-disciplinary approaches to link laboratory findings to the clinic with over 300 researche ...
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Comment: C: SomaticSignatures : change order of x-axis in plotMutationSpectrum
... Thanks Julian, it works! ...
written 3.1 years ago by sergio.martinezcuesta10
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SomaticSignatures : change order of x-axis in plotMutationSpectrum
... Hi Julian, I want to change the order of triplets in the Motif x-axis of plotMutationSpectrum so that Gs at the 3' are clumped together next to each other. In other words, say for C>T, I want to change the order from: A . A   A . C   A . G   A . T   C . A   C . C   C . G   C . T   G . A   G . C ...
somaticsignatures mutationcontext written 3.1 years ago by sergio.martinezcuesta10 • updated 3.1 years ago by Julian Gehring1.3k

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