User: predeus

gravatar for predeus
predeus0
Reputation:
0
Status:
New User
Location:
United States
Last seen:
1 year, 4 months ago
Joined:
2 years, 8 months ago
Email:
p******@gmail.com

Posts by predeus

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answers
433
views
1
answers
Comment: C: topGO - treating up- and down-regulated genes separately
... yeah, it's pretty clear how it works for Fisher's statistics and the like - you just select the genes you consider significant and calculate the p-value for 2x2 table it's much more tricky for KS (or KS-like, as in GSEA) - statistic should add up some statistic (in some power) to the running sum, r ...
written 16 months ago by predeus0
0
votes
1
answers
713
views
1
answers
Answer: A: pre-ranked GSEA within R: options?
... use fgsea package on Bioconductor ...
written 16 months ago by predeus0
0
votes
1
answer
433
views
1
answer
topGO - treating up- and down-regulated genes separately
... I've recently started using topGO in my expression analysis and like it a lot. The "elimination" paradigm is a very useful one when doing pathway analysis, since many different pathways do in fact overlap in the genes they contain.  In the manual, all the examples are using p-values as a statistic, ...
topgo pathway analysis gsea written 16 months ago by predeus0 • updated 16 months ago by Lluís R370
0
votes
2
answers
800
views
2
answers
Answer: A: how to perform pre ranked GSEA in R?
... use fgsea bioconductor package. ...
written 16 months ago by predeus0
2
votes
4
answers
2.3k
views
4
answers
GO.db installation error
... Hello all, I've been trying to install WGCNA on our cluster. It has module system, so I've chosen R-3.1.2 and installed bunch of libs locally (which all worked OK). Now, GO.db was the only one that failed to install. When I typed source("https://bioconductor.org/biocLite.R") biocLite("GO.db") ...
go sqlite written 2.7 years ago by predeus0 • updated 2.6 years ago by Daniel Lai0

Latest awards to predeus

Popular Question 16 months ago, created a question with more than 1,000 views. For GO.db installation error

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 164 users visited in the last hour