User: kawess

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kawess0
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Posts by kawess

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Pair-wise Limma Analysis with time series data and two levels (control and trea
... Thank you Gordon . My problem was because of the blocks. I will read the examples in the user manual. Thank you again ...
written 9 weeks ago by kawess0
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Comment: C: Pair-wise Limma Analysis with time series data and two levels ( control and trea
... Thank you I wrote a new post ...
written 9 weeks ago by kawess0
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Pair-wise Limma Analysis with time series data and two levels (control and treatment)
... Hello, I am a computer scientist who is new at analyzing microarray data. So my question may be too easy so I apologize for that. I really need help with that. I got some dataset on GEO (GSE44248) on the human LCL cell line. I want to analyze this data using Limma to find differentially expressed ge ...
microarray limma paired deg time series written 9 weeks ago by kawess0 • updated 9 weeks ago by Gordon Smyth39k
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Comment: C: Pair-wise Limma Analysis with time series data and two levels ( control and trea
... Thank you very much Micheal for pointing this out to me. I modified the question. Do you think that the design matrix will help me answer the question ? Thank you very much ...
written 9 weeks ago by kawess0
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(Closed) Pair-wise Limma Analysis with time series data and two levels ( control and treatment)
... Hello, I am a computer scientist who is new at analyzing microarray data. So my question may be too easy so I apologize for that. I really need help with that. I got some dataset on GEO (GSE44248) on the human LCL cell line. I want to analyze this data using Limma to find differentially expressed ge ...
limma time course rna-seq paired sample written 10 weeks ago by kawess0
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Answer: A: New to analysing miccroarrays data
... Thank you for your help. When reconstructing my network I don't want to compare the samples but instead find a correlation between the expression profiles of genes. Here my expression profile for a particular gene is the expression values across all the samples. ...
written 4.1 years ago by kawess0
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Answer: A: New to analysing miccroarrays data
... Thank you James for your response and for the links. As I should not merge the series, what should I have to do if I want to construct a big dataset (with many samples)? Because available series do not have enough sample. My objective is to reconstruct the gene regulatory network. ...
written 4.1 years ago by kawess0
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New to analysing miccroarrays data
... Hello, I am a computer science student who is trying to work with expression data for the first time. I went on GEO to download the raw data (because I want to merge different series). However the raw files have different extensions. Some are .CELL others are .CSV or .GPR. I tried to look at the .C ...
microarray written 4.1 years ago by kawess0

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