User: dborgesrmit

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Posts by dborgesrmit

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Comment: C: Rtracklayer creating large temp files when importing BigWigs
... Awesome! Looking forward to snagging it then. ...
written 2.8 years ago by dborgesrmit0
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Rtracklayer creating large temp files when importing BigWigs
... Hey, So when I import BigWig files using a URL I get large temporary files named by the URL and called "SparseData" as so:   input$query_range="chr5 1293401 1296392" split_query = strsplit(input$query_range,split="[\t ]")[[1]] temp_grange = GRanges(seqnames=Rle(split_query[1]), ...
rtracklayer bigwig written 2.8 years ago by dborgesrmit0 • updated 2.8 years ago by Michael Lawrence10k
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BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
... Hello, Whenever I try to use getSeq from the BSGenome package to fetch a sequence i get this error: getSeq(BSgenome.Hsapiens.UCSC.hg19,"chr7") Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   subscript contains NAs or out-of-bounds indices   sessionInfo() R version 3.2 ...
bsgenome getseq written 2.9 years ago by dborgesrmit0 • updated 2.9 years ago by Martin Morgan ♦♦ 22k

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