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User: elhananby

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elhananby10
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2 years, 11 months ago
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Posts by elhananby

<prev • 4 results • page 1 of 1 • next >
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Connection error using biomaRt
... Hey everyone, I'm trying to get gene names for a list of about 2k position on various chromosome I have. The query I'm using is: genes <- getBM(attributes=c('ensembl_gene_id', 'hgnc_symbol'), filters = c('chromosome_name', 'start', 'end'), values = list(chr, pos_start, pos_end), mart = ensemb ...
annotation biomart written 3.1 years ago by elhananby10 • updated 3.1 years ago by James W. MacDonald49k
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Answer: A: failed to load 'AnnotationHub' resource
... Hey Martin, thanks for the answer! But now I have a different problem - when running: AnnotationHub()[['AH47030']] I get this error: snapshotDate(): 2015-11-19 downloading from ‘https://annotationhub.bioconductor.org/fetch/52498’     ‘https://annotationhub.bioconductor.org/fetch/52499’ retriev ...
written 3.2 years ago by elhananby10
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failed to load 'AnnotationHub' resource
... Hey, Everytime I try to load a resource from annotationhub (following this guide), I get this error: downloading from ‘https://annotationhub.bioconductor.org/fetch/52446’     ‘https://annotationhub.bioconductor.org/fetch/52447’ retrieving 2 resources Error: failed to load 'AnnotationHub' resource ...
annotation annotationhub error written 3.2 years ago by elhananby10
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Not getting Adjusted p-values from multtest package
... Hello everybody, I'm trying to run an analysis on methylation percentage using the multtest package, but I'm running into a problem. I have a matrix where each columns is a subject, and each row is a number between 0-100, corresponding to percentage of methylation at that specific loci on the geno ...
multtest methylation adjusted pvalue written 3.2 years ago by elhananby10 • updated 3.2 years ago by kpollard110

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