User: Gregulator

gravatar for Gregulator
Gregulator30
Reputation:
30
Status:
New User
Location:
Australia
Last seen:
1 year, 9 months ago
Joined:
3 years, 11 months ago
Email:
g***********@uq.edu.au

Posts by Gregulator

<prev • 5 results • page 1 of 1 • next >
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Comment: C: getBM error: The query to the BioMart webservice returned an invalid result
... Mate, you're a legend. Should have checked that myself. working fine now ...
written 21 months ago by Gregulator30
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getBM error: The query to the BioMart webservice returned an invalid result
... Hey. I get this error everytime I use getBM() function: "The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1. Please report this to the mailing list." I had this same problem last time BiomaRt released an update but it was fixed by insta ...
biomart written 21 months ago by Gregulator30 • updated 21 months ago by Mike Smith4.0k
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Comment: C: missing gene_ids in org.Mm.egENSEMBL
... Fair enough. Thank you very much for your help ...
written 4.0 years ago by Gregulator30
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Comment: C: missing gene_ids in org.Mm.egENSEMBL
... Sorry. I was realize I was very confusing. I'll try to clarify using the H19 as an example. When I search for H19 on the Ensembl website I find that H19’s Ensembl gene ID is ENSMUSG00000000031 and the Entrez gene ID as 14955. When I search through the egENSEMBL table, the ENSEMBL gene ID ENSMUSG0000 ...
written 4.0 years ago by Gregulator30
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missing gene_ids in org.Mm.egENSEMBL
... I'm have been trying to annotate some RNAseq data using the org.Mm.eg.db. The count matrix I was sent by collaborators has ENSEMBL gene IDs. However, I have been having a problem with missing gene ids in the egENSEMBL table when I try to annotate. For example, one gene I am interested in, H19, has t ...
annotation org.mm.eg.db written 4.0 years ago by Gregulator30 • updated 4.0 years ago by James W. MacDonald52k

Latest awards to Gregulator

Popular Question 21 months ago, created a question with more than 1,000 views. For getBM error: The query to the BioMart webservice returned an invalid result
Student 21 months ago, asked a question with at least 3 up-votes. For getBM error: The query to the BioMart webservice returned an invalid result

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