User: brt381

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brt3810
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Posts by brt381

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Comment: C: Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not ins
... Great, thank you! Although it should be INSTALL_opts="--no-multiarch" rather than INSTALL_opts="no-multiarch". ...
written 7 months ago by brt3810
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Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
... When I try to install the Bioconductor package org.Hs.eg.db (as well as certain other packages) on Mac OS X, I get the error message "ERROR: sub-architecture 'R' is not installed". For (e.g.) github packages, I can get rid of this error by saying: install_github("package_name", args="--no-multiarc ...
mac os x package installation written 8 months ago by brt3810 • updated 8 months ago by Martin Morgan ♦♦ 22k
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Answer: A: Error when using multiple heatmaps in ComplexHeatmaps
... OK, this seems very strange. I was previously running the code I posted using Rscript, and it gives the indicated error. But when I run R interactively and copy-and-paste those lines in, it does work (with or without --vanilla). It does NOT work via Rscript whether with or without --vanilla. EDIT: ...
written 23 months ago by brt3810
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Error when using multiple heatmaps in ComplexHeatmaps
...   I am having difficulty with creating multiple heatmaps with the ComplexHeatmap package. When I run a script that contains code exactly lifted from the documentation (https://bioconductor.org/packages/release/bioc/vignettes/ComplexHeatmap/inst/doc/s3.a_list_of_heatmaps.html) ...
bug complexheatmap written 23 months ago by brt3810
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GenomicAlignments: counting transcripts versus counting genes
... I used Tophat to map some RNA-seq reads from four different samples against a reference genome (Arabidopsis), and then used SummarizeOverlaps to make a table of raw counts.  I tried to generate these counts for both genes and transcripts; to extract the gene annotations from my GFF file, I used the ...
genomicalignments written 3.0 years ago by brt3810 • updated 3.0 years ago by Thomas Girke1.7k

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Scholar 22 months ago, created an answer that has been accepted. For A: Error when using multiple heatmaps in ComplexHeatmaps

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