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Comment: C: interaction models DESeq2
3.9 years ago aec ▴ 90
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Comment: C: removing genes before RNA-seq normalization
4.4 years ago aec ▴ 90
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Comment: C: edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
5.2 years ago aec ▴ 90
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1.8k
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Comment: C: time series, block by patient, between and within comparisons limma-voom
5.6 years ago aec ▴ 90
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Comment: C: time series, block by patient, between and within comparisons limma-voom
5.6 years ago aec ▴ 90
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1.8k
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Comment: C: time series, block by patient, between and within comparisons limma-voom
5.6 years ago aec ▴ 90
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1.8k
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Comment: C: time series, block by patient, between and within comparisons limma-voom
5.6 years ago aec ▴ 90
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1.3k
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Comment: C: differential expression analysis with big dataset and >500 surrogate variables
6.0 years ago aec ▴ 90
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1.3k
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Comment: C: differential expression analysis with big dataset and >500 surrogate variables
6.0 years ago aec ▴ 90
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1.3k
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Comment: C: differential expression analysis with big dataset and >500 surrogate variables
6.0 years ago aec ▴ 90
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Comment: C: interaction model deseq2 specific DE genes
6.0 years ago aec ▴ 90
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Comment: C: weird behaviour DESeq2 1.18.1
6.1 years ago aec ▴ 90
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1.5k
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Comment: C: weird behaviour DESeq2 1.18.1
6.1 years ago aec ▴ 90
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1.5k
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Comment: C: weird behaviour DESeq2 1.18.1
6.2 years ago aec ▴ 90
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1.3k
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Comment: C: significant genes with DESeq2 plenty of outliers and zero counts
6.2 years ago aec ▴ 90
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1.3k
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Comment: C: significant genes with DESeq2 plenty of outliers and zero counts
6.2 years ago aec ▴ 90
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1.3k
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Comment: C: disagreement between log2FoldChange and lfcMLE in DESeq2
6.4 years ago aec ▴ 90
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2.5k
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Comment: C: Applying sva is compatible with limma duplicateCorrelation?
6.8 years ago aec ▴ 90
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2.4k
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Comment: C: normalization affects drastically limma-voom + sva results
6.8 years ago aec ▴ 90
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2.4k
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Comment: C: normalization affects drastically limma-voom + sva results
6.8 years ago aec ▴ 90
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2.4k
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Comment: C: normalization affects drastically limma-voom + sva results
6.8 years ago aec ▴ 90
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2.5k
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Comment: C: Applying sva is compatible with limma duplicateCorrelation?
6.8 years ago aec ▴ 90
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2.2k
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Comment: C: How to adjust for different cell type mixtures in differential expression analys
6.8 years ago aec ▴ 90
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2.5k
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Comment: C: How to deal with up to 75% of DE genes in RNA-seq (TMM, edgeR) ?
7.0 years ago aec ▴ 90
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1.9k
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Comment: C: How to proceed with different degradation levels of RNA-seq samples?
7.0 years ago aec ▴ 90
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1.4k
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Comment: C: How different ploidy affect differential expression analysis with RNA-seq
7.1 years ago aec ▴ 90
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1.4k
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Comment: C: edgeR time series DMSO correction
7.5 years ago aec ▴ 90
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1.4k
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Comment: C: edgeR time series DMSO correction
7.5 years ago aec ▴ 90
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1.4k
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Comment: C: edgeR time series DMSO correction
7.5 years ago aec ▴ 90
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1.1k
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Comment: C: Paired RNA-seq experiment with 3 factors using duplicateCorrelation
7.5 years ago aec ▴ 90
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1
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1.1k
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Comment: C: Paired RNA-seq experiment with 3 factors using duplicateCorrelation
7.5 years ago aec ▴ 90
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
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2
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
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1
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
0
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
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2.6k
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Comment: C: limma-voom or edgeR for paired designs both within and between comparisons
7.6 years ago aec ▴ 90
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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1
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5.3k
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Comment: C: limma - complex design with paired samples, sex and batch effect
8.3 years ago aec ▴ 90
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2.5k
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Comment: C: order of covariates for GLM with edgeR
8.3 years ago aec ▴ 90
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