User: michael.alexander.finger

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Posts by michael.alexander.finger

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featureAlignedSignal() error: deparse(sig): object 'sig' not found.
... Hello all. I am attempting to use "featureAlignedDistribution" in the "ChIPpeakAnno" package to get the binding curves for some subset of annotated peaks I have stored as GRanges object. My experimental test function is as follows: bindingPattern<-function(gr, bwpath, outprefix, ups=2000, down ...
chippeakanno bioconductor featurealigneddistribution featurealignedsignal written 22 months ago by michael.alexander.finger0 • updated 8 months ago by jun.yu0
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Generating unexpected peaks from DiffBind
... Hello. The lab I'm working with is comparing H3K4me3 binding in two different conditions of yeast cells using ChIP-seq. I am attempting to use DiffBind with the narrowPeak files generated from MACS2, along with bam files generated from mapping, to generate a set of peaks where differential binding i ...
chipseq diffbind written 2.6 years ago by michael.alexander.finger0 • updated 2.6 years ago by Rory Stark2.5k

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