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Posts by michael.alexander.finger
... Hello all. I am attempting to use "featureAlignedDistribution" in the "ChIPpeakAnno" package to get the binding curves for some subset of annotated peaks I have stored as GRanges object. My experimental test function is as follows: bindingPattern<-function(gr, bwpath, outprefix, ups=2000, down ...
... Hello. The lab I'm working with is comparing H3K4me3 binding in two different conditions of yeast cells using ChIP-seq. I am attempting to use DiffBind with the narrowPeak files generated from MACS2, along with bam files generated from mapping, to generate a set of peaks where differential binding i ...
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