User: anders.tondell

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Posts by anders.tondell

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Comment: C: ncdfFlowSet with dim=3
... Thank you so much, this is excellent! A test on our university system on a 200 frames ncdfFlowset: keyword changed instantly on the whole ncdfFlowset! I can't see why anyone would use any other flow cytometry software. Anders T ...
written 7 months ago by anders.tondell30
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ncdfFlowSet with dim=3
... I am currently working with a ncdfflowset from a large number of fcs-files (>1500). I need to set several keywords to NA, but it seems changing keywords on this large ncdfflowset are extremely time-consuming (~30 sec. pr. sample). However, on subsets of the ncdfflowset object with 100 samples (F ...
flow cytometry ncdfflow written 7 months ago by anders.tondell30 • updated 7 months ago by Jiang, Mike1.2k
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Comment: C: Unable to install flowWorkspace from github
... Thanx to both of you for clarifying answers. I will look into this. With regards, ...
written 18 months ago by anders.tondell30
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Unable to install flowWorkspace from github
... I am trying to install dev version of flowWorkspace to be able to install cytoUtils, but this fails. I do not have adm. rights on the system (at my univerisity, Windows), but Rtools was installed yesterday. Any help would be highly appreciated. (I need cytoUtils for MFI of flow data). install_githu ...
flowworkspace cytoutils written 18 months ago by anders.tondell30 • updated 18 months ago by Martin Morgan ♦♦ 23k
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Function to specify axis limits according to data range for node or parent node
... Hi, Se example below, from ggcyto vignettes: gh <- gs[[1]] nodes <- getNodes(gh, path = "auto")[c(3:6)] autoplot(gh, nodes, bins = 64)+ylim(???)   I am looking for a way to specify axis limits ("ylim") specifically for all Objects in a gating hierarchy, possibly by a function that uses t ...
autoplot ggcyto axis written 19 months ago by anders.tondell30
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Comment: C: decimal numbers in ggcyto geom_stats
... Thanks, this works very well. ...
written 2.7 years ago by anders.tondell30
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Comment: C: decimal numbers in ggcyto geom_stats
... Hi, I still have some trouble with digits in geom_stats in ggcyto (partly because I am not able to upgrade R/Bioconductor at my university). Is there an easy way to apply values to the geom_stats layer from gates extracted for example by getGate() and applied to the gatingset, and then for example ...
written 2.7 years ago by anders.tondell30
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decimal numbers in ggcyto geom_stats
... Hi, I am using ggcyto to make graphical display of flow cytometry data, from a gating hierarchy generated in OpenCyto. My problem is that I can't seem to find a way to control the number of decimals in gate labels. Default seem to be 3 numbers from the first non-zero number. Thus, in a gate the ge ...
ggcyto written 2.8 years ago by anders.tondell30 • updated 2.8 years ago by Jiang, Mike1.2k
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Comment: C: Problem with ggcyto/flowWorkspace from GitHub
... Yes, I will consider that. I think simultaneous gating on FSC, SSC and CD45 for lymphocytes would be handy, for example with a flowClust in three dimensions. 2016-01-11 22:10 GMT+01:00 Jiang, Mike [bioc] <noreply@bioconductor.org>: > Activity on a post you are following on support.biocond ...
written 3.7 years ago by anders.tondell30
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Comment: C: Problem with ggcyto/flowWorkspace from GitHub
... Thank you very much for excellent help and quick reply! Finally, I have got it right. The problem, I think, was that I did not realize that I should use R devel (this may not be emphasized sufficiently in the http://bioconductor.org/install/ site?) Now I am looking forward to playing around with ...
written 3.7 years ago by anders.tondell30 • updated 3.7 years ago by Martin Morgan ♦♦ 23k

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Popular Question 2.7 years ago, created a question with more than 1,000 views. For Problem with ggcyto/flowWorkspace from GitHub

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