User: gregory voisin

gravatar for gregory voisin
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Canada
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Posts by gregory voisin

<prev • 44 results • page 1 of 5 • next >
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run KEGGprofile sofware on UNIX server
... Hello,  I try to use KEGGprofile on Unix Server. Basically, I run this script : http://www.bioconductor.org/packages/release/bioc/vignettes/KEGGprofile/inst/doc/KEGGprofile.R at the last line of this script : the most interesting line because it draw the map pathway with information. temp<-plot ...
keggprofile unix error exit written 3.0 years ago by gregory voisin430
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Comment: C: Access to BiocGenerics 0.11.4 package
... Ok, i will try to the last version of R. Thanks for your help. Le Vendredi 5 septembre 2014 12h37, Steve Lianoglou a ?crit : Hi, On Fri, Sep 5, 2014 at 9:31 AM, gregory voisin wrote: > Hi James, > > the installation of goseq needs some dependencies and produces this error, when I ...
written 3.2 years ago by gregory voisin430
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Comment: C: Access to BiocGenerics 0.11.4 package
... Hi James, the installation of goseq needs some dependencies and produces this error, when I try to install it Error : package ?BiocGenerics? 0.10.0 was found, but >= 0.11.3 In R, with bioClite , installation of BiocGenerics, install an "old" version ( 0.8.0) In fact , I would like include a ...
written 3.2 years ago by gregory voisin430
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Access to BiocGenerics 0.11.4 package
... Hello , I try to download the BiocGenerics 0.11.4 package, directly on the website: http://bioconductor.jp/packages/3.0/bioc/html/BiocGenerics.html but I have a message : Server problem. How to get this package Thanks for your help. [[alternative HTML version deleted]] ...
biocgenerics written 3.2 years ago by gregory voisin430 • updated 3.2 years ago by James W. MacDonald45k
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Comment: C: apply function on genomicsRanges ob
... Hi Valirie, this is  the code . I call my function: obj_build_list5 = mclapply(obj_build_list3, function(x) {addconservedTFSInformation(x)}  ,mc.cores =nbcores) addconservedTFSInformation<- function(annot_chr){#annot_chr is a gr object   #load the initial TFS data and create a GRanges Obj   ...
written 3.4 years ago by gregory voisin430
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apply function on genomicsRanges obj
... Hello, Does the apply function exist for genomisRange object. Here , I don't talk about a genomicRangesList object but genomic Range. Is it pertinent to implement it ? Actually, I populate my gr object with a for loops : depending the position of the gene , I had some information in mcol( gr obj). ...
written 3.4 years ago by gregory voisin430
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Answer: A: Reg : Package RDAVIDWebService not connecting to DAVID-WS
... hi. There is a little error in the doc Please include email named parameter in the class creation like this david<-DAVIDWebService$new(email="myEmail@adress.ca") Greg VOISIN Le Vendredi 8 novembre 2013 12h52, Fazulur Rehaman a écrit : Dear Sir/Madam, Now I joined in Bioconductor's foru ...
written 4.0 years ago by gregory voisin430
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Answer: A: Limma and pre processing Agilent single color arrays
... hello Amanda, That is a script of a function ,( sorry but not comment in this function) . Maybe you find something interesting. let me know produce.differential.analysis <- function(RGobj,   ANNOTATION){     print(paste("Starting the  UNIVARIATE differential analysis for Agilent platform"))   ...
written 4.0 years ago by gregory voisin430
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Answer: A: Comparing microarray data from different platforms
... Hello Ahmet, that is a interesting problem. 1 Use a common pool of probesets based unigeneID : package BioMart. 2.The QC: I think that provide a QC for Affy, and QC for illumina separately is OK: simpleAffy, and lumi package 3. After you extract a raw data matrix composed of 2 experiment. 3.a you ev ...
written 4.1 years ago by gregory voisin430
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Bioconductor/R workshop for high-throughput data analysis (web version)
... Hello, Boasting a large collection of software for the analysis of biological data, Bioconductor and R are invaluable tools for data management, pipeline production, and analysis. To help biologists tackle the challenge of understanding and learning how to use these tools, BSC is offering an onlin ...
sequencing microarray written 4.2 years ago by gregory voisin430

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