User: dr

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dr10
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Posts by dr

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Reading and normalizing two-color Agilent microarrays
... Hi,   I have a mouse cell-line time-course gene expression data measured on two-color Agilent microarrays. At time = 0, RNA was purified from 4 cell-lines. Following that, all cell lines were treated with a drug, and then RNA was purified over 10 time points. The reference channel for each cell l ...
limma agilent microarrays written 13 months ago by dr10 • updated 13 months ago by Peter Langfelder2.2k
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Effieicntly convert DNAStringSetList to a character vector
... I'm using the VariantAnnotation​ package and I want to intersect two VCF files to find overlapping variants. What's the most efficient way to achieve this? I can intersect the coordinates of the two VCFs with the GenomicRanges::findOverlaps function, but I still want to make sure that the ALT field ...
variantannotation written 3.7 years ago by dr10

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