User: javier.mendoza

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Posts by javier.mendoza

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Goseq package in R:getting terms after using getgo
... I have a simple gene vector and trying to get the GO terms using the goseq package from Bioconductor in R. In this example just one gene:     > unique(d$genes[1])     > [1] "SMARCC1"          > head(stack(getgo(unique(d$genes[1]),'hg19','geneSymbol',fetch.cats=c("GO:BP"))))           val ...
gene ontology R bioconductor written 20 months ago by javier.mendoza0
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Comment: C: Print to txt file in specific way
... Hi, I was wondering where did you get that "term" column for each of the GO values? Thank you! ...
written 20 months ago by javier.mendoza0
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Plotting gene region using Sushi
... I am trying to plot a genomic region of interest using sushi. I am able to run the example, however I just can't get running my bed file by myself. This is my gene list in bed format, from ensembl: head(gl)      start     stop strand       gene       chrom score 1 66119285 66465398      1   SLC2 ...
R sushi written 22 months ago by javier.mendoza0 • updated 22 months ago by dphansti10

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