User: 1000G_Q

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1000G_Q0
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Comment: C: vcf postion extract
... might you be able to provide some lines to demonstrate? I  dont really get it. If i just type start() I dont get anything..so in whcih wya are the postions accessible?   Thanks!!!! ...
written 22 months ago by 1000G_Q0
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vcf postion extract
... Am trying to read in a vcf file to R. The vcf is from the 1000 G project here - ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/supporting/functional_annotation/filtered/ so the code library(VariantAnnotation) ScanVcfParam(info=c("EAS_AF","EUR_AF","AFR_AF","AMR_AF","SAS_AF","CSQ"))-> ...
variantannotation vcf position written 22 months ago by 1000G_Q0 • updated 22 months ago by Martin Morgan ♦♦ 20k

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