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Posts by vladhkim
... Courtesy of Matt Ritchie: Please try using genotype.Illumina() instead of the original crlmmIllumina() function for genotyping. Also for the HumanOmni2.5-8 V1-1, you'll need to set call.method="krlmm" This solved my problem. As it turns out genotype.Illumina() is not simply a wrapper function of ...
... Hi, I am trying to call genotypes with crlmm package version 1.28.2. My SNP array data was obtained using the following Illumina platforms: HumanCytoSNP-12 V2.1 (Annotation package: humancytosnp12v2p1h) HumanOmni2.5-8 V1-1 (Annotationpackage: humanomni258v1p1b) What I am doing is: samp ...
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