User: geparada88

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geparada8810
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10 months, 1 week ago
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1 year, 12 months ago
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Posts by geparada88

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Can not install deSolve
... Thank you Martin, I realised this after posting the question. I'll be more careful next time. ...
written 10 months ago by geparada8810
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Can not install deSolve
... Hello, I updated R, and now I can not install deSolve. I am getting a compilation error:   install.packages("deSolve") trying URL 'https://cran.rstudio.com/src/contrib/deSolve_1.14.tar.gz' Content type 'application/x-gzip' length 2341489 bytes (2.2 MB) ============================================ ...
installation compilation error written 11 months ago by geparada8810 • updated 11 months ago by Martin Morgan ♦♦ 21k
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Comment: C: Get internal exons using GenomicFeatures
... You are totally right! I was having problems to use internal_exons as a list. Thanks a lot. ...
written 21 months ago by geparada8810
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Get internal exons using GenomicFeatures
... Hi I'm trying to make a Granges objet with all the internal exons of the genes annotated in a GTF file. I using this code: txdb <- makeTxDbFromGFF("./gencode.vM9.chr_patch_hapl_scaff.annotation.gtf.sed", format="gtf") exons <- exonsBy(txdb, by="tx") internal_exons <- lapply(exons, ...
genomicfeatures granges written 21 months ago by geparada8810 • updated 21 months ago by Michael Lawrence9.9k
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Comment: C: Fraction arguments for multi mapping reads in featureCounts in Rsubread
... Is this option available for the command line version of FeatureCounts as well?     ...
written 24 months ago by geparada8810

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