User: kritikamish99

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Posts by kritikamish99

<prev • 45 results • page 1 of 5 • next >
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Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc
... Hi , I am try to install the package affy and oligo. However i am getting error Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc I am not able to resolve this. Kindly help   sessionInfo() R version 3.5.0 (2018-04-23) Platform: x86_64-w64-mingw32/x64 (64-bit ...
affy oligo error written 9 days ago by kritikamish9910
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Comment: C: How to make custom CDF file for Clariom D human chip
... So i can not use package like affy etc . Because if i use also it ask CDF into enviorment . ...
written 9 weeks ago by kritikamish9910
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Comment: C: How to make custom CDF file for Clariom D human chip
... Agree but i need to do RMA-Alt-splicing Normalisation so for this i need to have CDF file ...
written 9 weeks ago by kritikamish9910
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How to make custom CDF file for Clariom D human chip
... Hi I have 40 samples for human clariom D chip. I need CDF file in environment for running any analysis using affy package. So how to make custom cdf file for clariom D human chip in R As i can see it is not available in affymetrix website.     ...
cdf clariom d written 9 weeks ago by kritikamish9910 • updated 9 weeks ago by Guido Hooiveld2.3k
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RNA degradation plot for Clariom S and Clariom D
... Hi Is there any package for RNA degradation for clariom S and Clariom D both. I tried AffyRNAdeg() but it is giving me error Error in getCdfInfo(object) :    Could not obtain CDF environment, problems encountered: Specified environment does not contain Clariom_D_Human Library - package clariomdh ...
clariom rna degradation written 9 weeks ago by kritikamish9910 • updated 9 weeks ago by James W. MacDonald46k
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how to generate CDF and before normalisation and after normlisation plot for Clariom D
... Hi I have certain data for clariom D i need to generate CDF file also i want before normalisation and after normalisation plots plots include:- 1)Box plot 2) density 3) MA plot 4) RNA degradation plot 5) NUSE plot 6) RLE plot 7) Heirahcial clustering plot 8) PCA plot 9) Corelation plot ...
clariom d written 9 weeks ago by kritikamish9910 • updated 9 weeks ago by Guido Hooiveld2.3k
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Answer: A: design matrix problem im limma
... Hi newbie_R Can you show limma code (lmfit) which you used? ...
written 6 months ago by kritikamish9910
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Comment: C: How to filter all column using Loop
... Hi Martin Morgan I agree its not bioconductor questions. Actually i have Gene expression data . And it has 103 samples with FC value and 20000 probes What i wanted is filtering all sample at cut off 1.5 FC . So i queried here.     ...
written 6 months ago by kritikamish9910
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Comment: C: How to filter all column using Loop
... Hi Hauken_Heyken Thank you . The Code is working !! But its not giving me file b . Out result is the table "e" values also how will iterate for all the columns (file b and c ) ...
written 6 months ago by kritikamish9910
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Comment: C: How to filter all column using Loop
... Hi hauken_heyken my query is suppose i have table with column a , b, c ,d a=c("A","B","C","D","E","F","G") b=c(1,2,3,4,5,8,10) c=c(1,2,3,4,6,7,10) d=c(1,2,10,5,12,15,10) e = as.data.table(cbind(a,b,c,d))   What i want is 3 files with name b, c, d because its a column name. The file "b" wi ...
written 6 months ago by kritikamish9910

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Popular Question 17 months ago, created a question with more than 1,000 views. For how to use idat file for analyses in bioconductor

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