User: grimmerucsf

gravatar for grimmerucsf
Reputation:
0
Status:
New User
Last seen:
1 year, 1 month ago
Joined:
3 years, 8 months ago
Email:
g**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by grimmerucsf

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
352
views
1
answers
Comment: C: DESeq2 batch correction and possible ComBat/SVA over-correction of RNA-seq data
... If the batch designations come into play later in the DE calculations, but not at all in the transformations, it seems that ComBat may be the culprit. Thanks! ...
written 13 months ago by grimmerucsf0
0
votes
1
answer
352
views
1
answer
DESeq2 batch correction and possible ComBat/SVA over-correction of RNA-seq data
... We have three RNA-seq batches for ~60 samples where batches are known and the "condition" is not well-distributed across batches. For example: batch A = all tumor subtype 1 batch B = all tumor subtype 2 batch C = a mix of subtype 1 and subtype 2   For this reason, I suspect batch correction may ...
sva deseq2 combat rna-seq written 13 months ago by grimmerucsf0 • updated 13 months ago by Michael Love25k
0
votes
5
answers
1.4k
views
5
answers
Answer: A: package 'ChAMP' demo/test code fails at champ.CNA()
... Changing all "C" values in the "Sample_Group" column to "Control"  in the csv file worked for me. ...
written 3.7 years ago by grimmerucsf0

Latest awards to grimmerucsf

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 400 users visited in the last hour