User: grimmerucsf
grimmerucsf • 0
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Posts by grimmerucsf
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... If the batch designations come into play later in the DE calculations, but not at all in the transformations, it seems that ComBat may be the culprit. Thanks!
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written 7 months ago by
grimmerucsf • 0
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... We have three RNA-seq batches for ~60 samples where batches are known and the "condition" is not well-distributed across batches. For example:
batch A = all tumor subtype 1
batch B = all tumor subtype 2
batch C = a mix of subtype 1 and subtype 2
For this reason, I suspect batch correction may ...
written 7 months ago by
grimmerucsf • 0
• updated
7 months ago by
Michael Love ♦ 23k
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... Changing all "C" values in the "Sample_Group" column to "Control" in the csv file worked for me.
...
written 3.2 years ago by
grimmerucsf • 0
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