User: MedwayC

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MedwayC0
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Posts by MedwayC

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Comment: C: DEXSeq Error: unable to find an inherited method for function ‘mcols’ for signat
... Ah! Thanks very much Alejandro. I will do as you suggest. Chris ...
written 3.5 years ago by MedwayC0
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Comment: C: DEXSeq Error: unable to find an inherited method for function ‘mcols’ for signat
... I have sent a Dropbox link to your private email address. Let me know if you don't get it. Chris  ...
written 3.5 years ago by MedwayC0
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Comment: C: DEXSeq Error: unable to find an inherited method for function ‘mcols’ for signat
... Hi Alejandro, Thanks for the reply. Sure, how do I send it to you? ...
written 3.5 years ago by MedwayC0
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DEXSeq Error: unable to find an inherited method for function ‘mcols’ for signature ‘"matrix"’
...   I have successfully run DEXSeq using a simple design; two experimental conditions, each with two replicates. However, I am now trying to run a more complex model, and I am getting the following error:   > fullModel <- ~sample + exon + treatment:exon + time:exon + treatment:time:exon > ...
dexseq written 3.5 years ago by MedwayC0 • updated 3.5 years ago by Alejandro Reyes1.7k
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DEXSeq on time series - how to set up models
... I have three different treatment times (0h (untreated), 3h and 6h), and three samples for each time point, 9 samples in total. I want to perform a single test to identify exons where the level of expression is dependent of the 'dose' of time; 0h<3h<6h OR 0h>3h>6h . I have read the vigne ...
timecourse dexseq rna-seq differential exon usage written 3.6 years ago by MedwayC0 • updated 3.6 years ago by Alejandro Reyes1.7k

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