User: viswanathan.raghuram

Reputation:
0
Status:
New User
Last seen:
3 years ago
Joined:
3 years, 1 month ago
Email:
v*******************@nih.gov

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by viswanathan.raghuram

<prev • 8 results • page 1 of 1 • next >
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... Its working now.. ...
written 3.0 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... You are correct I reconstruced the database. It is workingnow. Thanks a lot.I will keep you updated.. Thanks   ...
written 3.0 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... It works for the example data set,but not for my dataset. I get the following error.  Error in replacePranges(object, value) :    Names of replacement pranges differ from current ones. > library("Pbase") Loading required package: BiocGenerics Loading required package: parallel Attaching packag ...
written 3.0 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... Unable to subset pranges(p) > data(p) > length(pranges(p)) [1] 9 > lengths(pranges(p))   A4UGR9   A6H8Y1   O43707   O75369   P00558   P02545   P04075 P04075-2   P60709        36       23        6       13        5       12       21       20        1  > delta <- pcols(p)[, "experiment ...
written 3.0 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Answer: A: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... Unable to install  the latest version ---------------------------------------------------------- > library("devtools") > install_github("ComputationalProteomicsUnit/Pbase") Downloading GitHub repo ComputationalProteomicsUnit/Pbase@master from URL https://api.github.com/repos/ComputationalPro ...
written 3.1 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... Thanks. I will try this ...
written 3.1 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Comment: C: Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to bui
... I have multiple mzID files, which I can combine and filter  by MSnId.  I would like to create a 'Proteins' object and  map the identified peptides back to the genome. Currently, I can create a 'Proteins' object and add the identified peptides in one 'mzID or more 'mzID' files, via  p <- addIden ...
written 3.1 years ago by viswanathan.raghuram0
0
votes
2
answers
837
views
2
answers
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
... I would like to build my Proteins database using the mzid files filtered by MsnId. Can you somebody please help me. Is it possible to add identifications from as a data.frame Thanks Viswanathan Raghuram ...
pbase mzid msnbase msnid written 3.1 years ago by viswanathan.raghuram0 • updated 3.0 years ago by Sebastian Gibb80

Latest awards to viswanathan.raghuram

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 291 users visited in the last hour