User: Praveen Kumar

Reputation:
0
Status:
New User
Location:
Last seen:
1 week, 4 days ago
Joined:
2 years, 9 months ago
Email:
r***************@gmail.com

Posts by Praveen Kumar

<prev • 4 results • page 1 of 1 • next >
0
votes
2
answers
819
views
2
answers
Comment: C: DESeq2 model matrix error : Levels or combinations of levels without any samples
... Thank you so much.  ...
written 2.7 years ago by Praveen Kumar0
0
votes
2
answers
819
views
2
answers
Comment: C: DESeq2 model matrix error : Levels or combinations of levels without any samples
... Biological question is that we are trying to find DEG between left and right side of embryo in each of the 4 somite stages(3, 4, 5 &6). Yes I understand that stage and condition are similar. I can avoid the column stage. Am I right in using DESeqDataSetFromHTSeqCount with simple design and all?. ...
written 2.7 years ago by Praveen Kumar0
0
votes
2
answers
819
views
2
answers
Answer: A: DESeq2 model matrix error : Levels or combinations of levels without any samples
... Thank you very much for the response. Please find my codes below, # Twelve different mouse was used to find DEG between four somite stages mouse.lr  = c("one","two","three","four","five","six","seven","eight","nine","ten","eleven","twelve") stage.lr    = c(rep("3L",3), rep("4L",3), rep("5L",3), re ...
written 2.7 years ago by Praveen Kumar0
2
votes
2
answers
819
views
2
answers
DESeq2 model matrix error : Levels or combinations of levels without any samples have resulted in column(s) of zeros in the model matrix.
... I am using DESeq2 1.10.1. I am facing model matrix error with "Levels or combinations of levels without any samples have resulted in  column(s) of zeros in the model matrix". From the manual I understood that I have to manually edit a model matrix to remove columns with only zeros. The issue I am fa ...
deseq2 written 2.7 years ago by Praveen Kumar0

Latest awards to Praveen Kumar

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 423 users visited in the last hour