Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
1
vote
1
reply
1.5k
views
Answer:
Answer: PureCN: Copy Number of 7 issue
2.4 years ago
markus.riester
▴ 130
0
votes
1
reply
990
views
Answer:
Answer: PureCN COSMIC VCF via PureCN.R - is there an option?
2.7 years ago
markus.riester
▴ 130
0
votes
0
replies
703
views
Answer:
Answer: PureCN performance of somatic/germline status prediction without matched normal?
2.7 years ago
markus.riester
▴ 130
0
votes
1
reply
871
views
Answer:
Answer: Corrupt data in Sex column of .csv file
3.0 years ago
markus.riester
▴ 130
0
votes
1
reply
1.0k
views
Answer:
A: PureCN gene LOH very common, amp/del not
4.0 years ago
markus.riester
▴ 130
0
votes
1
reply
977
views
Answer:
C: Why is PureCN LOH file missing some segments
4.2 years ago
markus.riester
▴ 130
0
votes
0
replies
801
views
Answer:
A: PureCN: Why is average coverage used for segmentation and not the denoised fragm
4.4 years ago
markus.riester
▴ 130
0
votes
1
reply
913
views
Answer:
A: callLOH output file NA values
5.0 years ago
markus.riester
▴ 130
0
votes
0
replies
1.0k
views
Answer:
A: PureCN.R warning "duplicate keys in header will be forced to unique rownames"
5.0 years ago
markus.riester
▴ 130
0
votes
0
replies
879
views
Answer:
C: Chromosome arm loss and --maxhomozygousloss default
5.4 years ago
markus.riester
▴ 130
0
votes
0
replies
878
views
Answer:
A: Copy ratio close to but not exactly 1
5.5 years ago
markus.riester
▴ 130
0
votes
1
reply
1.1k
views
Answer:
A: Assigning DUP/DEL p-value to CNV segment
5.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.0k
views
Answer:
A: Copy ratio threshold for calling actual CNV
5.6 years ago
markus.riester
▴ 130
0
votes
0
replies
905
views
Answer:
A: Mutation Burden file and manual curation
5.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.0k
views
Answer:
C: PureCN Solution Heatmap values
5.6 years ago
markus.riester
▴ 130
0
votes
1
reply
1.1k
views
Answer:
A: CNV in Normal Samples?
5.6 years ago
markus.riester
▴ 130
1
vote
0
replies
869
views
Answer:
A: PureCN recover optimum solution
5.7 years ago
markus.riester
▴ 130
0
votes
0
replies
749
views
Answer:
A: PureCN PureCN.R --rds option recreate all output files?
5.7 years ago
markus.riester
▴ 130
1
vote
1
reply
1.0k
views
Answer:
A: PureCN Manual Curation .rds file
5.7 years ago
markus.riester
▴ 130
0
votes
1
reply
1.4k
views
Answer:
A: PureCN optimum solution vs heat map
5.7 years ago
markus.riester
▴ 130
0
votes
1
reply
1.8k
views
Answer:
A: Is mean adjusted for purity?
5.9 years ago
markus.riester
▴ 130
0
votes
0
replies
970
views
Answer:
A: Is C adjusted for purity?
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
875
views
Answer:
A: PureCN removemapq0 parameter
6.0 years ago
markus.riester
▴ 130
0
votes
3
replies
1.3k
views
Answer:
C: Private Germline Count is mostly 0
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
1.3k
views
Answer:
A: PureCN use of VCF QUAL column for filtering when column is dot
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
1.2k
views
Answer:
A: PureCN.R _variants.csv file prior.somatic and somatic variant count
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
918
views
Answer:
A: Dx.R somatic_ontarget column
6.0 years ago
markus.riester
▴ 130
0
votes
0
replies
989
views
Answer:
A: coverage QC file mean duplication and "mom" columns
6.0 years ago
markus.riester
▴ 130
0
votes
0
replies
1.8k
views
Answer:
A: VCF file non-SNP germline mutations
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
979
views
Answer:
A: PureCN warning: test.num.copy outside recommended range
6.0 years ago
markus.riester
▴ 130
0
votes
1
reply
1.3k
views
Answer:
A: PureCN error: zero-length 'labels' specified
6.0 years ago
markus.riester
▴ 130
0
votes
0
replies
791
views
Answer:
A: PureCN Panel of Normals contents
6.0 years ago
markus.riester
▴ 130
2
votes
1
reply
1.5k
views
Answer:
A: Something wrong with my Bioconductor installation? ggtree cannot read any tree
6.0 years ago
markus.riester
▴ 130
3
votes
1
reply
1.6k
views
Answer:
A: Understanding PureCN and its germline SNPs
6.1 years ago
markus.riester
▴ 130
1
vote
0
replies
951
views
Answer:
A: PureCN support for indels
6.1 years ago
markus.riester
▴ 130
0
votes
1
reply
1.9k
views
Answer:
A: Standardizing gene symbols
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
markus.riester
▴ 130
0
votes
1
reply
1.4k
views
Answer:
A: errors in version 1.7.53
6.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.1k
views
Answer:
A: errors in Purecn callLOH
6.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.4k
views
Answer:
A: wrong output of DNAcopy::segment() for chr. with empty copy number data
6.7 years ago
markus.riester
▴ 130
0
votes
1
reply
1.5k
views
Answer:
A: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
6.8 years ago
markus.riester
▴ 130
1
vote
1
reply
1.2k
views
Answer:
A: PureCN can classify indel variants as germline vs. somatic ?
6.9 years ago
markus.riester
▴ 130
0
votes
0
replies
962
views
Answer:
A: how to make sure PureCN gets somatic status from VCF?
7.4 years ago
markus.riester
▴ 130
0
votes
0
replies
1.1k
views
Answer:
A: Classification with large number of qualitative variables
7.4 years ago
markus.riester
▴ 130
0
votes
1
reply
1.6k
views
Answer:
A: Package to retrive Cosmic data
7.6 years ago
markus.riester
▴ 130
0
votes
0
replies
686
views
Answer:
A: Error in running example code of PureCN
7.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.5k
views
Answer:
A: Error in running development version of PureCN
7.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.5k
views
Answer:
A: Error in running development version of PureCN
7.6 years ago
markus.riester
▴ 130
0
votes
0
replies
1.5k
views
Answer:
A: How to create a data frame with overlapping segments from CNV oncoscan arrays?
7.6 years ago
markus.riester
▴ 130
0
votes
0
replies
937
views
Answer:
A: Bug Report/Question for PureCN: createSNPBlacklist() Error
7.8 years ago
markus.riester
▴ 130
49 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6