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Answer: Answer: PureCN: Copy Number of 7 issue
2.5 years ago markus.riester ▴ 130
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1.0k
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Answer: Answer: PureCN COSMIC VCF via PureCN.R - is there an option?
2.7 years ago markus.riester ▴ 130
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731
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Answer: Answer: PureCN performance of somatic/germline status prediction without matched normal?
2.8 years ago markus.riester ▴ 130
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1
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889
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Answer: Answer: Corrupt data in Sex column of .csv file
3.1 years ago markus.riester ▴ 130
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1
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1.1k
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Answer: A: PureCN gene LOH very common, amp/del not
4.0 years ago markus.riester ▴ 130
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1
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990
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Answer: C: Why is PureCN LOH file missing some segments
4.2 years ago markus.riester ▴ 130
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813
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Answer: A: PureCN: Why is average coverage used for segmentation and not the denoised fragm
4.4 years ago markus.riester ▴ 130
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927
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Answer: A: callLOH output file NA values
5.1 years ago markus.riester ▴ 130
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1.0k
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Answer: A: PureCN.R warning "duplicate keys in header will be forced to unique rownames"
5.1 years ago markus.riester ▴ 130
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893
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Answer: C: Chromosome arm loss and --maxhomozygousloss default
5.5 years ago markus.riester ▴ 130
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887
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Answer: A: Copy ratio close to but not exactly 1
5.6 years ago markus.riester ▴ 130
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1
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1.1k
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Answer: A: Assigning DUP/DEL p-value to CNV segment
5.6 years ago markus.riester ▴ 130
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0
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1.0k
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Answer: A: Copy ratio threshold for calling actual CNV
5.6 years ago markus.riester ▴ 130
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0
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917
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Answer: A: Mutation Burden file and manual curation
5.6 years ago markus.riester ▴ 130
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1.0k
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Answer: C: PureCN Solution Heatmap values
5.6 years ago markus.riester ▴ 130
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1
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1.2k
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Answer: A: CNV in Normal Samples?
5.7 years ago markus.riester ▴ 130
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881
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Answer: A: PureCN recover optimum solution
5.8 years ago markus.riester ▴ 130
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0
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765
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Answer: A: PureCN PureCN.R --rds option recreate all output files?
5.8 years ago markus.riester ▴ 130
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1.0k
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Answer: A: PureCN Manual Curation .rds file
5.8 years ago markus.riester ▴ 130
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1
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1.4k
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Answer: A: PureCN optimum solution vs heat map
5.8 years ago markus.riester ▴ 130
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1
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1.8k
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Answer: A: Is mean adjusted for purity?
6.0 years ago markus.riester ▴ 130
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0
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983
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Answer: A: Is C adjusted for purity?
6.0 years ago markus.riester ▴ 130
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882
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Answer: A: PureCN removemapq0 parameter
6.0 years ago markus.riester ▴ 130
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3
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1.3k
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Answer: C: Private Germline Count is mostly 0
6.0 years ago markus.riester ▴ 130
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1
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1.3k
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Answer: A: PureCN use of VCF QUAL column for filtering when column is dot
6.1 years ago markus.riester ▴ 130
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1
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1.2k
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Answer: A: PureCN.R _variants.csv file prior.somatic and somatic variant count
6.1 years ago markus.riester ▴ 130
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1
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933
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Answer: A: Dx.R somatic_ontarget column
6.1 years ago markus.riester ▴ 130
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0
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1.0k
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Answer: A: coverage QC file mean duplication and "mom" columns
6.1 years ago markus.riester ▴ 130
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0
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1.9k
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Answer: A: VCF file non-SNP germline mutations
6.1 years ago markus.riester ▴ 130
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1
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993
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Answer: A: PureCN warning: test.num.copy outside recommended range
6.1 years ago markus.riester ▴ 130
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1
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1.3k
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Answer: A: PureCN error: zero-length 'labels' specified
6.1 years ago markus.riester ▴ 130
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0
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800
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Answer: A: PureCN Panel of Normals contents
6.1 years ago markus.riester ▴ 130
2
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1
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1.5k
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Answer: A: Something wrong with my Bioconductor installation? ggtree cannot read any tree
6.1 years ago markus.riester ▴ 130
3
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1
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1.6k
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Answer: A: Understanding PureCN and its germline SNPs
6.1 years ago markus.riester ▴ 130
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0
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966
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Answer: A: PureCN support for indels
6.1 years ago markus.riester ▴ 130
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1
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2.0k
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Answer: A: Standardizing gene symbols
updated 6.5 years ago by 50k • written 6.5 years ago by ▴ 130
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1
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1.4k
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Answer: A: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
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0
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1.1k
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Answer: A: errors in Purecn callLOH
6.7 years ago markus.riester ▴ 130
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0
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1.5k
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Answer: A: wrong output of DNAcopy::segment() for chr. with empty copy number data
6.8 years ago markus.riester ▴ 130
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1
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1.5k
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Answer: A: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
6.9 years ago markus.riester ▴ 130
1
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1
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1.2k
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Answer: A: PureCN can classify indel variants as germline vs. somatic ?
7.0 years ago markus.riester ▴ 130
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0
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972
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Answer: A: how to make sure PureCN gets somatic status from VCF?
7.5 years ago markus.riester ▴ 130
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0
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1.1k
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Answer: A: Classification with large number of qualitative variables
7.5 years ago markus.riester ▴ 130
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1
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1.6k
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Answer: A: Package to retrive Cosmic data
7.6 years ago markus.riester ▴ 130
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0
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695
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Answer: A: Error in running example code of PureCN
7.6 years ago markus.riester ▴ 130
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0
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1.5k
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Answer: A: Error in running development version of PureCN
7.6 years ago markus.riester ▴ 130
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0
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1.5k
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Answer: A: Error in running development version of PureCN
7.6 years ago markus.riester ▴ 130
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0
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1.5k
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Answer: A: How to create a data frame with overlapping segments from CNV oncoscan arrays?
7.7 years ago markus.riester ▴ 130
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0
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964
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Answer: A: Bug Report/Question for PureCN: createSNPBlacklist() Error
7.9 years ago markus.riester ▴ 130
49 results • Page 1 of 1
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