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Comment: Comment: Mutect version, matched normal and manual curation in PureCN
22 months ago markus.riester ▴ 130
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Comment: Comment: Mutect version, matched normal and manual curation in PureCN
23 months ago markus.riester ▴ 130
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1.5k
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Comment: Comment: PureCN: Copy Number of 7 issue
2.4 years ago markus.riester ▴ 130
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1.5k
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Comment: Comment: PureCN: Copy Number of 7 issue
2.4 years ago markus.riester ▴ 130
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1.5k
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Comment: Comment: PureCN: Copy Number of 7 issue
2.4 years ago markus.riester ▴ 130
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1.5k
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Comment: Comment: PureCN: Copy Number of 7 issue
2.4 years ago markus.riester ▴ 130
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1.5k
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Answer: Answer: PureCN: Copy Number of 7 issue
2.4 years ago markus.riester ▴ 130
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1.3k
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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.5 years ago markus.riester ▴ 130
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1.3k
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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.5 years ago markus.riester ▴ 130
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0
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1.3k
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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.5 years ago markus.riester ▴ 130
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990
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Comment: Comment: PureCN COSMIC VCF via PureCN.R - is there an option?
2.6 years ago markus.riester ▴ 130
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990
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Answer: Answer: PureCN COSMIC VCF via PureCN.R - is there an option?
2.7 years ago markus.riester ▴ 130
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704
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Answer: Answer: PureCN performance of somatic/germline status prediction without matched normal?
2.7 years ago markus.riester ▴ 130
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1
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871
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Answer: Answer: Corrupt data in Sex column of .csv file
3.0 years ago markus.riester ▴ 130
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0
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2.8k
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Comment: Comment: Assembly report error for hg19 in GenomeInfoDb
3.1 years ago markus.riester ▴ 130
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1
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2.8k
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Comment: Comment: Assembly report error for hg19 in GenomeInfoDb
3.1 years ago markus.riester ▴ 130
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1
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1.2k
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Comment: C: PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
3.9 years ago markus.riester ▴ 130
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1.0k
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Comment: C: PureCN gene LOH very common, amp/del not
4.0 years ago markus.riester ▴ 130
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1
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1.0k
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Answer: A: PureCN gene LOH very common, amp/del not
4.0 years ago markus.riester ▴ 130
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1
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977
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Comment: C: Why is PureCN LOH file missing some segments
4.2 years ago markus.riester ▴ 130
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1
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977
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Answer: C: Why is PureCN LOH file missing some segments
4.2 years ago markus.riester ▴ 130
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801
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Answer: A: PureCN: Why is average coverage used for segmentation and not the denoised fragm
4.4 years ago markus.riester ▴ 130
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1
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913
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Answer: A: callLOH output file NA values
5.0 years ago markus.riester ▴ 130
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1.0k
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Answer: A: PureCN.R warning "duplicate keys in header will be forced to unique rownames"
5.0 years ago markus.riester ▴ 130
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879
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Answer: C: Chromosome arm loss and --maxhomozygousloss default
5.4 years ago markus.riester ▴ 130
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2.5k
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Comment: C: Issue with BiocParallel
5.5 years ago markus.riester ▴ 130
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2.5k
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Comment: C: Issue with BiocParallel
5.5 years ago markus.riester ▴ 130
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1
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2.5k
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Comment: C: Issue with BiocParallel
5.5 years ago markus.riester ▴ 130
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0
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878
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Answer: A: Copy ratio close to but not exactly 1
5.6 years ago markus.riester ▴ 130
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0
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1.1k
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Comment: C: Assigning DUP/DEL p-value to CNV segment
5.6 years ago markus.riester ▴ 130
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1
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1.1k
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Answer: A: Assigning DUP/DEL p-value to CNV segment
5.6 years ago markus.riester ▴ 130
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1.0k
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Answer: A: Copy ratio threshold for calling actual CNV
5.6 years ago markus.riester ▴ 130
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0
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905
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Answer: A: Mutation Burden file and manual curation
5.6 years ago markus.riester ▴ 130
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0
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1.0k
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Answer: C: PureCN Solution Heatmap values
5.6 years ago markus.riester ▴ 130
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1
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1.1k
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Answer: A: CNV in Normal Samples?
5.6 years ago markus.riester ▴ 130
1
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0
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869
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Answer: A: PureCN recover optimum solution
5.7 years ago markus.riester ▴ 130
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749
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Answer: A: PureCN PureCN.R --rds option recreate all output files?
5.7 years ago markus.riester ▴ 130
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0
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1.0k
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Comment: C: PureCN Manual Curation .rds file
5.7 years ago markus.riester ▴ 130
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0
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1.4k
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Comment: C: PureCN optimum solution vs heat map
5.7 years ago markus.riester ▴ 130
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1
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1.0k
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Answer: A: PureCN Manual Curation .rds file
5.7 years ago markus.riester ▴ 130
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1
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1.4k
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Answer: A: PureCN optimum solution vs heat map
5.7 years ago markus.riester ▴ 130
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0
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1.9k
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Comment: C: PureCN: Error in plot.window(...) : need finite 'ylim' values
5.9 years ago markus.riester ▴ 130
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0
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1.2k
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Comment: C: PureCN Error in xg[1, ] : incorrect number of dimensions
5.9 years ago markus.riester ▴ 130
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1
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1.7k
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Comment: C: How can I improve somatic/germline status prediction without matched normal (Pur
5.9 years ago markus.riester ▴ 130
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1
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1.7k
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Comment: C: How can I improve somatic/germline status prediction without matched normal (Pur
5.9 years ago markus.riester ▴ 130
0
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1
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1.7k
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Comment: C: How can I improve somatic/germline status prediction without matched normal (Pur
5.9 years ago markus.riester ▴ 130
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0
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1.7k
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Comment: C: Unable to find solution: low coverage
5.9 years ago markus.riester ▴ 130
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1
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1.7k
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Comment: C: Unable to find solution: low coverage
5.9 years ago markus.riester ▴ 130
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1
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1.8k
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Comment: C: Is mean adjusted for purity?
5.9 years ago markus.riester ▴ 130
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0
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1.7k
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Comment: C: Unable to find solution: low coverage
5.9 years ago markus.riester ▴ 130
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