User: pathkim

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pathkim0
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Posts by pathkim

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Comment: C: PureCN can classify indel variants as germline vs. somatic ?
... Dear Markus; Thanks for your kind reply. I also found this comment that samples with tumor purities below 20% usually cannot be analyzed with this algorithm. It can be improved in a new PureCN version? JOHEON KIM ...
written 5 months ago by pathkim0
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PureCN can classify indel variants as germline vs. somatic ?
... Dear administrator; I found this comment that the software currently does not officially support VCF files containing indels. Support for VCFs generated by MuTect 2 that include both single nucleotide variants (SNVs) and indels is planned for Bioconductor 3.5.  Now, the version of bioconductor is ...
indel purecn somatic germline written 5 months ago by pathkim0 • updated 5 months ago by markus.riester20
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Question about EAGenes (TCGAbiolinks)
... I have one simple question about TCGAbiolinks. Could you please tell me how I can get "EAgenes"? I know that “EAgenes” is a table with informations about genes such as ID, Gene, Description, Location and Family. Thanks very much in advance. ...
genetics annotation cancer biomart R written 20 months ago by pathkim0 • updated 20 months ago by tiagochst80

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