User: pathkim

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pathkim0
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Posts by pathkim

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Comment: C: PureCN can classify indel variants as germline vs. somatic ?
... Dear Markus; Thanks for your kind reply. I also found this comment that samples with tumor purities below 20% usually cannot be analyzed with this algorithm. It can be improved in a new PureCN version? JOHEON KIM ...
written 2.4 years ago by pathkim0
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PureCN can classify indel variants as germline vs. somatic ?
... Dear administrator; I found this comment that the software currently does not officially support VCF files containing indels. Support for VCFs generated by MuTect 2 that include both single nucleotide variants (SNVs) and indels is planned for Bioconductor 3.5.  Now, the version of bioconductor is ...
indel purecn somatic germline written 2.4 years ago by pathkim0 • updated 2.4 years ago by markus.riester110
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Question about EAGenes (TCGAbiolinks)
... I have one simple question about TCGAbiolinks. Could you please tell me how I can get "EAgenes"? I know that “EAgenes” is a table with informations about genes such as ID, Gene, Description, Location and Family. Thanks very much in advance. ...
genetics annotation cancer biomart R written 3.7 years ago by pathkim0 • updated 3.7 years ago by Tiago Chedraoui Silva240

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