User: Pandurang Kolekar

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Posts by Pandurang Kolekar

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Comment: C: How to specify the illumina phred scoring scheme in RSamtools pileup function?
... Thank you Martin for your suggestion! I will try out this. Does anybody else have experienced this problem before? ...
written 3.6 years ago by Pandurang Kolekar10
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How to specify the illumina phred scoring scheme in RSamtools pileup function?
... Hi, I am using pileup function in Rsamtools version 1.22.0. The bam file that I used as an input to the function has Illumina1.3+ based (phred64) scoring scheme. So I wish to know if there is any way to specify the phred scoring scheme to pileup function via pileupParam or scanBamParam. Does it dec ...

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