User: Rinaldo Bertossa

Reputation:
20
Status:
New User
Location:
Netherlands
Last seen:
3 years, 3 months ago
Joined:
3 years, 4 months ago
Email:
r***********@rug.nl

Posts by Rinaldo Bertossa

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.
... I think I found the problem or, better, the solution. There seems to be an incompatibility between the DGElist object called 'y' created in edgeR and calling the AnnotationHub/AnnotationDBI commands above (e.g. head(keys(org.Nv.eg.db)) ), which results in an error (in my hands at least). The solut ...
written 3.3 years ago by Rinaldo Bertossa20
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Comment: C: Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.
... Could that help: my personal libraries (including AnnotationHub, AnnotationDBI) are on Dropbox. This allows me to access them from work and home without the need to install and update them twice. Standard R libraries are local. Update: I stored personal libraries locally. It did not solve the probl ...
written 3.3 years ago by Rinaldo Bertossa20
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Comment: C: Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.
... I've downloaded two other databases and tried again but I get the same error. For all I can use e.g. columns() but not keys(). So I would exclude a problem with the database itself... ...
written 3.3 years ago by Rinaldo Bertossa20
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Comment: C: Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.
... Hi Martin, thank you. I'm not familiar with SQL yet. I get this error when I try running your code (after having copied the resource): Error: is(x, "AnnotationHub") is not TRUE  ...
written 3.3 years ago by Rinaldo Bertossa20
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Comment: C: Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.
... Thank you James, I appreciate. At least I know it should work ;)   ...
written 3.3 years ago by Rinaldo Bertossa20
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Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
... Hi, I've performed a DE genes analysis with edgeR. Now I am trying to analyze GO terms associated with my DE genes. I'm trying to get the GO terms for my 'non-model organism' via the AnnotationHub. I'm trying to follow these instructions (given in the post https://support.bioconductor.org/p/7648 ...
limma annotationdbi edger annotationhub kegga written 3.3 years ago by Rinaldo Bertossa20 • updated 3.0 years ago by cagenet3420

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