User: Seth Falcon

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Seth Falcon7.4k
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Posts by Seth Falcon

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Answer: A: pulling functional information for SNPs
... Hi Jim, On 5/4/10 11:56 AM, James W. MacDonald wrote: > Getting a query for 700K things will likely take a long time. Had you > mentioned that you were using the Affy 6.0 chip, we could have gone in a > different direction. > > biocLite("pd.genomewidesnp.6") ## this will take a while ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: segfault with rmaMicroRna in AgiMicroRna package
... Heyi, A couple of suggestions to help you get help more quickly. 1. Try upgrading your R and Bioconductor packages to the latest release and see if that resolves the problem for you. 2. If you still see the crash, since you are running on Linux you should be able to extract some further debugging ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: GOstats and htmlReport
... Hi Loren, On 4/25/10 6:13 PM, Loren Engrav wrote: > Have GOstats up and see > >> GOstatsSummary01 <- summary(GOstatsOver01, htmlLinks="true") > >> class(GOstatsSummary01) > [1] "data.frame" > >> htmlReport(GOstatsSummary01, file="GOstatsSummary01.html") > Erro ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: error in loading 'org.Hs.eg.db'
... On 4/19/10 2:30 AM, LiYun wrote: > Hi, > > I am trying to install the package "hthgu133a.db", however there is > a problem to load the package 'org.Hs.eg.db' and I don't know how to figure > it out, here is the error information and the session infor. > > Hop ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: load failed for 'Rlibstree'
... Hi Paul, On 4/8/10 10:21 AM, Paul Shannon wrote: > While working my way through the rtracklayer pdf, I get stuck when > > library (microRNA) > > tries to load Rlibstree, with this error message: > > Loading required package: Rlibstree > Error in dyn.load(file, DLLpa ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: pdInfoBuilder: invalid class object ("ScalarCharacter")
... On 4/7/10 11:55 AM, Hooiveld, Guido wrote: > Dear list, > I am trying to build an annotation package for the Mouse Gene 1.1 ST > Array Plate (GeneTitan peg array) using pdInfoBuilder. As input i use > the PGF, CLF, etc files downloaded from Affymetrix. However, the > following lines o ...
written 7.6 years ago by Seth Falcon7.4k
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Answer: A: Problem in running expresso command in affy package
... Hi, Please read the posting guide and provide the list with more information about your setup (sessionInfo()) as well as more details on what isn't working. Ideally, try to provide an easily reproducible example perhaps using sample data that comes with the packages. + seth On 3/27/10 1:00 AM, P ...
written 7.7 years ago by Seth Falcon7.4k
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Answer: A: Using RCurl to upload CEL files to a LIMS
... Hi Stephen, On 3/22/10 12:37 PM, stephen at mnemosyne.co.uk wrote: > I am trying without success to upload an Affy CEL file to a LIMS > system using RCurl. > The LIMS expects to receive a multipart formatted http post request > with some metadata in the headers. When I try to create an ...
written 7.7 years ago by Seth Falcon7.4k
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Answer: A: Calculation of $stdev.unscaled and $sigma values by lmfit() in Limma package
... On 3/20/10 4:49 PM, John Holden wrote: > Hi, > > I am not able to understand what R is doing in the background while > calculating the $stdev.unscaled and $sigma values from using the lmfit() > function for microarrays. > > Any ideas? I suspect you mean the lmFit() function? Y ...
written 7.7 years ago by Seth Falcon7.4k
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Comment: C: snapCGH, runBioHMM, Error: segfault from C stack overflow
... On 3/16/10 9:15 AM, Seth Falcon wrote: > On 3/16/10 3:39 AM, Ivanek, Robert wrote: >> Hi Seth, >> >> I tried it with a new version of R and BioConductor but I am still >> getting the same error. >> Any ideas? > > Can you make your MA.cgh2 object available (you ...
written 7.7 years ago by Seth Falcon7.4k

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Popular Question 7.6 years ago, created a question with more than 1,000 views. For [R] object is not subsettable
Centurion 7.6 years ago, created 100 posts.

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