User: manduchi

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manduchi0
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Posts by manduchi

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GOTHiC odd output
... Hello, I'm trying to test GOTHiC (version 1.6.0) on a dataset obtained from HiCUP, whose head is copied below. I'm using R version 3.2.2 with the following commands: res=GOTHiChicup("hicup_2oligos.txt",sampleName="2oligos",res=100,"hg19_DpnII.txt",cistrans='all',parallel=TRUE, cores=8) write.tabl ...
gothic written 3.2 years ago by manduchi0
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r3Cseq problems in batch mode
... Hello, I'm using r3Cseq Version: 1.16.0 (Built with R 3.2.2). I'm trying to use this in batch mode and I found the following problem:   1. I do not have controls, I have 2 experimental files. When I initialize my batch object, even though I set the argument isControlInvolved to FALSE, I still ge ...
r3cseq written 3.4 years ago by manduchi0 • updated 2.2 years ago by izzy.yichao.cai10

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