User: donny.dw

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Posts by donny.dw

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Comment: C: Limma design and contrast matrix
... Understand! Thanks so much for you help. ...
written 3.2 years ago by donny.dw0
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Answer: A: Limma design and contrast matrix
... Thanks so much for your reply. I do change the "colnames" and use topTable to show the results. Below is the code when I ran 3 groups analysis.  And I misused the words "totally different". Actually, there are overlap genes. The different is the DE genes number when I use different design matrix. ...
written 3.2 years ago by donny.dw0
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Limma design and contrast matrix
... I have a question when I analysis the microarray data collected from Affymetrix mouse transcriptome array. I have four groups  Control,Special Diet,Special Diet+Drug1,Special Diet+Drug2 When I use limma to ge DE genes, I tried to design the matrix in four ways. 1.  4 groups, Control,Special Diet, ...
limma limma design matrix limma contrast matrix written 3.2 years ago by donny.dw0

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