User: mdelrgg

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mdelrgg0
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Posts by mdelrgg

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Answer: A: DESeq: Error in model.matrix.formula(design(object), data = colData(object)) :
... Here > sessionInfo() R version 3.2.3 (2015-12-10) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.5 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  [1] stats4    parallel  grid      stats     graphics  grDevi ...
written 2.5 years ago by mdelrgg0
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Answer: A: DESeq: Error in model.matrix.formula(design(object), data = colData(object)) :
... Hello colData   TREAT LAT A-P56-1 A 56N A-P56-3 A 56N A-P67-1 A 67N A-P67-2 A 67N A-P67-3 A 67N B-P56-1 B 56N B-P56-2 B 56N B-P56-3 B 56N B-P67-1 B ...
written 2.5 years ago by mdelrgg0
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DESeq: Error in model.matrix.formula(design(object), data = colData(object)) : data must be a data.frame
... Hello 1) I have two imput files: countData (counts of reads per gene, RNAseq type of data) and colData as .csv. > colData<-read.csv("Pine_ColData.csv", sep=";", header=TRUE, check.names=FALSE,row.names=1) > countData<-read.csv("Pine_RNAseq_no outliers.csv", sep=";", header=TRUE, check ...
deseq2 written 2.5 years ago by mdelrgg0 • updated 2.2 years ago by Simon Anders3.5k

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